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DNA sequencing

Detection of EGFR mutations in non-small cell lung cancer by droplet digital PCR

Drew F. K. Williamson, Sean R. N. Marris, Vanesa Rojas-Rudilla, Jacqueline L. Bruce, Cloud P. Paweletz, Geoffrey R. Oxnard, Lynette M. Sholl, Fei Dong

published 24 Feb 2022

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Consecutive deletions in a unique Uruguayan SARS-CoV-2 lineage evidence the genetic variability potential of accessory genes

Yanina Panzera, Lucía Calleros, Natalia Goñi, Ana Marandino, Claudia Techera, Sofía Grecco, Natalia Ramos, Sandra Frabasile, Gonzalo Tomás, Emma Condon, María Noel Cortinas, Viviana Ramas, Leticia Coppola, Cecilia Sorhouet, Cristina Mogdasy, Héctor Chiparelli, Juan Arbiza, Adriana Delfraro, Ruben Pérez

published 17 Feb 2022

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Cryptic MYC insertions in Burkitt lymphoma: New data and a review of the literature

Renata Woroniecka, Grzegorz Rymkiewicz, Lukasz M. Szafron, Katarzyna Blachnio, Laura A. Szafron, Zbigniew Bystydzienski, Barbara Pienkowska-Grela, Klaudia Borkowska, Jolanta Rygier, Aleksandra Kotyl, Natalia Malawska, Katarzyna Wojtkowska, Joanna Parada, Anita Borysiuk, Victor Murcia Pienkowski, Malgorzata Rydzanicz, Beata Grygalewicz

published 15 Feb 2022

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Tracking ebolavirus genomic drift with a resequencing microarray

Irina Tiper, Moussa Kourout, Bryan Lanning, Carolyn Fisher, Krishnamurthy Konduru, Anjan Purkayastha, Gerardo Kaplan, Robert Duncan

published 10 Feb 2022

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Comparison of seven SNP calling pipelines for the next-generation sequencing data of chickens

Jing Liu, Qingmiao Shen, Haigang Bao

published 31 Jan 2022

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Identification of pharmacogenetic variants from large scale next generation sequencing data in the Saudi population

Ewa Goljan, Mohammed Abouelhoda, Mohamed M. ElKalioby, Amjad Jabaan, Nada Alghithi, Brian F. Meyer, Dorota Monies

published 28 Jan 2022

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Single gene targeted nanopore sequencing enables simultaneous identification and antimicrobial resistance detection of sexually transmitted infections

Liqing Zhou, Andrea Lopez Rodas, Luz Marina Llangarí, Natalia Romero Sandoval, Philip Cooper, Syed Tariq Sadiq

published 21 Jan 2022

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Confounds of using the unc-58 selection marker highlights the importance of genotyping co-CRISPR genes

Helena Rawsthorne-Manning, Fernando Calahorro, Patricia G. Izquierdo, Philippe Tardy, Thomas Boulin, Lindy Holden-Dye, Vincent O’Connor, James Dillon

published 18 Jan 2022

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Evaluation of a parasite-density based pooled targeted amplicon deep sequencing (TADS) method for molecular surveillance of Plasmodium falciparum drug resistance genes in Haiti

Swarnali Louha, Camelia Herman, Mansi Gupta, Dhruviben Patel, Julia Kelley, Je-Hoon M. OH, Janani Guru, Jean F. Lemoine, Michelle A. Chang, Udhayakumar Venkatachalam, Eric Rogier, Eldin Talundzic

published 14 Jan 2022

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Longitudinal variability in the urinary microbiota of healthy premenopausal women and the relation to neighboring microbial communities: A pilot study

Lena M. Biehl, Fedja Farowski, Catharina Hilpert, Angela Nowag, Anne Kretzschmar, Nathalie Jazmati, Anastasia Tsakmaklis, Imke Wieters, Yascha Khodamoradi, Hilmar Wisplinghoff, Maria J. G. T. Vehreschild

published 14 Jan 2022

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NGS read classification using AI

Benjamin Voigt, Oliver Fischer, Christian Krumnow, Christian Herta, Piotr Wojciech Dabrowski

published 22 Dec 2021

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Alu element in the RNA binding motif protein, X-linked 2 (RBMX2) gene found to be linked to bipolar disorder

Pia Laine, William J. Rowell, Lars Paulin, Steve Kujawa, Denise Raterman, George Mayhew, Jennifer Wendt, Daniel L. Burgess, Timo Partonen, Tiina Paunio, Petri Auvinen, Jenny M. Ekholm

published 16 Dec 2021

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CRISPR/Cas9-mediated generation of biallelic F0 anemonefish (Amphiprion ocellaris) mutants

Laurie J. Mitchell, Valerio Tettamanti, Justin S. Rhodes, N. Justin Marshall, Karen L. Cheney, Fabio Cortesi

published 15 Dec 2021

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