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DNA sequencing

Assessing Matched Normal and Tumor Pairs in Next-Generation Sequencing Studies

Liang Goh, Geng Bo Chen, Ioana Cutcutache, Benjamin Low, Bin Tean Teh, Steve Rozen, Patrick Tan

published 18 Mar 2011

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A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, Yang Yang, Yifei Tang, Jing Shang, Bairong Shen

published 14 Mar 2011

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Unifying Gene Expression Measures from Multiple Platforms Using Factor Analysis

Xin Victoria Wang, Roel G. W. Verhaak, Elizabeth Purdom, Paul T. Spellman, Terence P. Speed

published 11 Mar 2011

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Decoding a Substantial Set of Samples in Parallel by Massive Sequencing

Mårten Neiman, Sverker Lundin, Peter Savolainen, Afshin Ahmadian

published 09 Mar 2011

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Viral Linkage in HIV-1 Seroconverters and Their Partners in an HIV-1 Prevention Clinical Trial

Mary S. Campbell, James I. Mullins, James P. Hughes, Connie Celum, Kim G. Wong, Dana N. Raugi, Stefanie Sorensen, Julia N. Stoddard, Hong Zhao, Wenjie Deng, Erin Kahle, Dana Panteleeff, Jared M. Baeten, Francine E. McCutchan, Jan Albert, Thomas Leitner, Anna Wald, Lawrence Corey, Jairam R. Lingappa, for the Partners in Prevention HSV/HIV Transmission Study Team

published 02 Mar 2011

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A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes

Lee T. Sam, Doron Lipson, Tal Raz, Xuhong Cao, John Thompson, Patrice M. Milos, Dan Robinson, Arul M. Chinnaiyan, Chandan Kumar-Sinha, Christopher A. Maher

published 01 Mar 2011

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Phenotype Sequencing: Identifying the Genes That Cause a Phenotype Directly from Pooled Sequencing of Independent Mutants

Marc A. Harper, Zugen Chen, Traci Toy, Iara M. P. Machado, Stanley F. Nelson, James C. Liao, Christopher J. Lee

published 18 Feb 2011

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Systematic Evaluation of Three microRNA Profiling Platforms: Microarray, Beads Array, and Quantitative Real-Time PCR Array

Bin Wang, Paul Howel, Skjalg Bruheim, Jingfang Ju, Laurie B. Owen, Oystein Fodstad, Yaguang Xi

published 11 Feb 2011

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Performance of Microarray and Liquid Based Capture Methods for Target Enrichment for Massively Parallel Sequencing and SNP Discovery

Anna Kiialainen, Olof Karlberg, Annika Ahlford, Snaevar Sigurdsson, Kerstin Lindblad-Toh, Ann-Christine Syvänen

published 09 Feb 2011

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Dissection of Splicing Regulation at an Endogenous Locus by Zinc-Finger Nuclease-Mediated Gene Editing

Sandra Cristea, Philip D. Gregory, Fyodor D. Urnov, Gregory J. Cost

published 08 Feb 2011

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Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads

Schraga Schwartz, Ram Oren, Gil Ast

published 31 Jan 2011

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Mayday SeaSight: Combined Analysis of Deep Sequencing and Microarray Data

Florian Battke, Kay Nieselt

published 31 Jan 2011

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Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling

Felix Krueger, Simon R. Andrews, Cameron S. Osborne

published 28 Jan 2011

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