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DNA sequencing

Assessing Matched Normal and Tumor Pairs in Next-Generation Sequencing Studies

Liang Goh, Geng Bo Chen, [ ... ], Patrick Tan

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

Wenyu Zhang, Jiajia Chen, [ ... ], Bairong Shen

Unifying Gene Expression Measures from Multiple Platforms Using Factor Analysis

Xin Victoria Wang, Roel G. W. Verhaak, [ ... ], Terence P. Speed

Decoding a Substantial Set of Samples in Parallel by Massive Sequencing

Mårten Neiman, Sverker Lundin, Peter Savolainen, Afshin Ahmadian

Viral Linkage in HIV-1 Seroconverters and Their Partners in an HIV-1 Prevention Clinical Trial

Mary S. Campbell, James I. Mullins, [ ... ], for the Partners in Prevention HSV/HIV Transmission Study Team

A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes

Lee T. Sam, Doron Lipson, [ ... ], Christopher A. Maher

Phenotype Sequencing: Identifying the Genes That Cause a Phenotype Directly from Pooled Sequencing of Independent Mutants

Marc A. Harper, Zugen Chen, [ ... ], Christopher J. Lee

Systematic Evaluation of Three microRNA Profiling Platforms: Microarray, Beads Array, and Quantitative Real-Time PCR Array

Bin Wang, Paul Howel, [ ... ], Yaguang Xi

Performance of Microarray and Liquid Based Capture Methods for Target Enrichment for Massively Parallel Sequencing and SNP Discovery

Anna Kiialainen, Olof Karlberg, [ ... ], Ann-Christine Syvänen

Dissection of Splicing Regulation at an Endogenous Locus by Zinc-Finger Nuclease-Mediated Gene Editing

Sandra Cristea, Philip D. Gregory, Fyodor D. Urnov, Gregory J. Cost

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads

Schraga Schwartz, Ram Oren, Gil Ast

Mayday SeaSight: Combined Analysis of Deep Sequencing and Microarray Data

Florian Battke, Kay Nieselt

Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling

Felix Krueger, Simon R. Andrews, Cameron S. Osborne

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