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DNA sequencing

Systematic Comparison of Three Methods for Fragmentation of Long-Range PCR Products for Next Generation Sequencing

Ellen Knierim, Barbara Lucke, Jana Marie Schwarz, Markus Schuelke, Dominik Seelow

published 30 Nov 2011

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Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

Brandi L. Cantarel, Alison R. Erickson, Nathan C. VerBerkmoes, Brian K. Erickson, Patricia A. Carey, Chongle Pan, Manesh Shah, Emmanuel F. Mongodin, Janet K. Jansson, Claire M. Fraser-Liggett, Robert L. Hettich

published 23 Nov 2011

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Genotyping of Environmental and Clinical Stenotrophomonas maltophilia Isolates and their Pathogenic Potential

Martina Adamek, Jörg Overhage, Stephan Bathe, Josef Winter, Reinhard Fischer, Thomas Schwartz

published 15 Nov 2011

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Rapid Colorimetric Testing for Pyrazinamide Susceptibility of M. tuberculosis by a PCR-Based In-Vitro Synthesized Pyrazinamidase Method

Man Zhou, Xuelei Geng, Jun Chen, Xude Wang, Dianbing Wang, Jiaoyu Deng, Zhiping Zhang, Weihua Wang, Xian-En Zhang, Hongping Wei

published 10 Nov 2011

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Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

Jiří Macas, Eduard Kejnovský, Pavel Neumann, Petr Novák, Andrea Koblížková, Boris Vyskot

published 09 Nov 2011

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Methylation of the CpG Sites Only on the Sense Strand of the APC Gene Is Specific for Hepatocellular Carcinoma

Surbhi Jain, Ting-Tsung Chang, James P. Hamilton, Selena Y. Lin, Yih-Jyh Lin, Alison A. Evans, Florin M. Selaru, Pin- Wen Lin, Shun-Hua Chen, Timothy M. Block, Chi-Tan Hu, Wei Song, Stephen J. Meltzer, Ying-Hsiu Su

published 02 Nov 2011

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Fast and Cost-Effective Mining of Microsatellite Markers Using NGS Technology: An Example of a Korean Water Deer Hydropotes inermis argyropus

Jeong-Nam Yu, Changman Won, Jumin Jun, YoungWoon Lim, Myounghai Kwak

published 01 Nov 2011

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Quantitative Bias in Illumina TruSeq and a Novel Post Amplification Barcoding Strategy for Multiplexed DNA and Small RNA Deep Sequencing

Filip Van Nieuwerburgh, Sandra Soetaert, Katie Podshivalova, Eileen Ay-Lin Wang, Lana Schaffer, Dieter Deforce, Daniel R. Salomon, Steven R. Head, Phillip Ordoukhanian

published 28 Oct 2011

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A Method for Metagenomics of Helicobacter pylori from Archived Formalin-Fixed Gastric Biopsies Permitting Longitudinal Studies of Carcinogenic Risk

Zongli Zheng, Anders F. Andersson, Weimin Ye, Olof Nyrén, Staffan Normark, Lars Engstrand

published 21 Oct 2011

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Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing

Samuel V. Angiuoli, James R. White, Malcolm Matalka, Owen White, W. Florian Fricke

published 19 Oct 2011

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ConDeTri - A Content Dependent Read Trimmer for Illumina Data

Linnéa Smeds, Axel Künstner

published 19 Oct 2011

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RNA-Seq Analyses Generate Comprehensive Transcriptomic Landscape and Reveal Complex Transcript Patterns in Hepatocellular Carcinoma

Qichao Huang, Biaoyang Lin, Hanqiang Liu, Xi Ma, Fan Mo, Wei Yu, Lisha Li, Hongwei Li, Tian Tian, Dong Wu, Feng Shen, Jinliang Xing, Zhi-Nan Chen

published 17 Oct 2011

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Expression Profiling without Genome Sequence Information in a Non-Model Species, Pandalid Shrimp (Pandalus latirostris), by Next-Generation Sequencing

Ryouka Kawahara-Miki, Kenta Wada, Noriko Azuma, Susumu Chiba

published 10 Oct 2011

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