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DNA sequencing

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Chengwei Luo, Despina Tsementzi, Nikos Kyrpides, Timothy Read, Konstantinos T. Konstantinidis

published 10 Feb 2012

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Feature-by-Feature – Evaluating De Novo Sequence Assembly

Francesco Vezzi, Giuseppe Narzisi, Bud Mishra

published 03 Feb 2012

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CAPRG: Sequence Assembling Pipeline for Next Generation Sequencing of Non-Model Organisms

Arun Rawat, Mohamed O. Elasri, Kurt A. Gust, Glover George, Don Pham, Leona D. Scanlan, Chris Vulpe, Edward J. Perkins

published 03 Feb 2012

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Knowledge-Based Reconstruction of mRNA Transcripts with Short Sequencing Reads for Transcriptome Research

Junhee Seok, Weihong Xu, Hui Jiang, Ronald W. Davis, Wenzhong Xiao

published 01 Feb 2012

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NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

published 01 Feb 2012

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Customisation of the Exome Data Analysis Pipeline Using a Combinatorial Approach

Swetansu Pattnaik, Srividya Vaidyanathan, Durgad G. Pooja, Sa Deepak, Binay Panda

published 06 Jan 2012

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IQSeq: Integrated Isoform Quantification Analysis Based on Next-Generation Sequencing

Jiang Du, Jing Leng, Lukas Habegger, Andrea Sboner, Drew McDermott, Mark Gerstein

published 06 Jan 2012

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Probing the SELEX Process with Next-Generation Sequencing

Tatjana Schütze, Barbara Wilhelm, Nicole Greiner, Hannsjörg Braun, Franziska Peter, Mario Mörl, Volker A. Erdmann, Hans Lehrach, Zoltán Konthur, Marcus Menger, Peter F. Arndt, Jörn Glökler

published 29 Dec 2011

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Identification of Sequence Variants in Genetic Disease-Causing Genes Using Targeted Next-Generation Sequencing

Xiaoming Wei, Xiangchun Ju, Xin Yi, Qian Zhu, Ning Qu, Tengfei Liu, Yang Chen, Hui Jiang, Guanghui Yang, Ruan Zhen, Zhangzhang Lan, Ming Qi, Jinming Wang, Yi Yang, Yuxing Chu, Xiaoyan Li, Yanfang Guang, Jian Huang

published 21 Dec 2011

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A Viral Discovery Methodology for Clinical Biopsy Samples Utilising Massively Parallel Next Generation Sequencing

Gordon M. Daly, Nick Bexfield, Judith Heaney, Sam Stubbs, Antonia P. Mayer, Anne Palser, Paul Kellam, Nizar Drou, Mario Caccamo, Laurence Tiley, Graeme J. M. Alexander, William Bernal, Jonathan L. Heeney

published 21 Dec 2011

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Prevalence and Impact of Minority Variant Drug Resistance Mutations in Primary HIV-1 Infection

Joanne D. Stekler, Giovanina M. Ellis, Jacquelyn Carlsson, Braiden Eilers, Sarah Holte, Janine Maenza, Claire E. Stevens, Ann C. Collier, Lisa M. Frenkel

published 16 Dec 2011

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Is High Resolution Melting Analysis (HRMA) Accurate for Detection of Human Disease-Associated Mutations? A Meta Analysis

Bing-Sheng Li, Xin-Ying Wang, Feng-Li Ma, Bo Jiang, Xiao-Xiao Song, An-Gao Xu

published 14 Dec 2011

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Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss, Dirk Gevers, Sarah L. Westcott

published 14 Dec 2011

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