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DNA sequencing

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

published 01 Feb 2012

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Customisation of the Exome Data Analysis Pipeline Using a Combinatorial Approach

Swetansu Pattnaik, Srividya Vaidyanathan, Durgad G. Pooja, Sa Deepak, Binay Panda

published 06 Jan 2012

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IQSeq: Integrated Isoform Quantification Analysis Based on Next-Generation Sequencing

Jiang Du, Jing Leng, Lukas Habegger, Andrea Sboner, Drew McDermott, Mark Gerstein

published 06 Jan 2012

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Probing the SELEX Process with Next-Generation Sequencing

Tatjana Schütze, Barbara Wilhelm, Nicole Greiner, Hannsjörg Braun, Franziska Peter, Mario Mörl, Volker A. Erdmann, Hans Lehrach, Zoltán Konthur, Marcus Menger, Peter F. Arndt, Jörn Glökler

published 29 Dec 2011

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Identification of Sequence Variants in Genetic Disease-Causing Genes Using Targeted Next-Generation Sequencing

Xiaoming Wei, Xiangchun Ju, Xin Yi, Qian Zhu, Ning Qu, Tengfei Liu, Yang Chen, Hui Jiang, Guanghui Yang, Ruan Zhen, Zhangzhang Lan, Ming Qi, Jinming Wang, Yi Yang, Yuxing Chu, Xiaoyan Li, Yanfang Guang, Jian Huang

published 21 Dec 2011

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A Viral Discovery Methodology for Clinical Biopsy Samples Utilising Massively Parallel Next Generation Sequencing

Gordon M. Daly, Nick Bexfield, Judith Heaney, Sam Stubbs, Antonia P. Mayer, Anne Palser, Paul Kellam, Nizar Drou, Mario Caccamo, Laurence Tiley, Graeme J. M. Alexander, William Bernal, Jonathan L. Heeney

published 21 Dec 2011

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Prevalence and Impact of Minority Variant Drug Resistance Mutations in Primary HIV-1 Infection

Joanne D. Stekler, Giovanina M. Ellis, Jacquelyn Carlsson, Braiden Eilers, Sarah Holte, Janine Maenza, Claire E. Stevens, Ann C. Collier, Lisa M. Frenkel

published 16 Dec 2011

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Is High Resolution Melting Analysis (HRMA) Accurate for Detection of Human Disease-Associated Mutations? A Meta Analysis

Bing-Sheng Li, Xin-Ying Wang, Feng-Li Ma, Bo Jiang, Xiao-Xiao Song, An-Gao Xu

published 14 Dec 2011

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Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

Patrick D. Schloss, Dirk Gevers, Sarah L. Westcott

published 14 Dec 2011

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Detection and Characterization of Wolbachia Infections in Natural Populations of Aphids: Is the Hidden Diversity Fully Unraveled?

Antonis A. Augustinos, Diego Santos-Garcia, Eva Dionyssopoulou, Marta Moreira, Aristeidis Papapanagiotou, Marios Scarvelakis, Vangelis Doudoumis, Silvia Ramos, Antonio F. Aguiar, Paulo A. V. Borges, Manhaz Khadem, Amparo Latorre, George Tsiamis, Kostas Bourtzis

published 13 Dec 2011

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Systematic Comparison of Three Methods for Fragmentation of Long-Range PCR Products for Next Generation Sequencing

Ellen Knierim, Barbara Lucke, Jana Marie Schwarz, Markus Schuelke, Dominik Seelow

published 30 Nov 2011

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Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

Brandi L. Cantarel, Alison R. Erickson, Nathan C. VerBerkmoes, Brian K. Erickson, Patricia A. Carey, Chongle Pan, Manesh Shah, Emmanuel F. Mongodin, Janet K. Jansson, Claire M. Fraser-Liggett, Robert L. Hettich

published 23 Nov 2011

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Genotyping of Environmental and Clinical Stenotrophomonas maltophilia Isolates and their Pathogenic Potential

Martina Adamek, Jörg Overhage, Stephan Bathe, Josef Winter, Reinhard Fischer, Thomas Schwartz

published 15 Nov 2011

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