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DNA extraction

Signal and noise in metabarcoding data

Zachary Gold, Andrew Olaf Shelton, Helen R. Casendino, Joe Duprey, Ramón Gallego, Amy Van Cise, Mary Fisher, Alexander J. Jensen, Erin D’Agnese, Elizabeth Andruszkiewicz Allan, Ana Ramón-Laca, Maya Garber-Yonts, Michaela Labare, Kim M. Parsons, Ryan P. Kelly

published 11 May 2023

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Evaluation of alcohol-free mouthwash for studies of the oral microbiome

Yukiko Yano, Emily Vogtmann, Alaina H. Shreves, Stephanie J. Weinstein, Amanda Black, Norma Diaz-Mayoral, Yunhu Wan, Weiyin Zhou, Xing Hua, Casey L. Dagnall, Amy Hutchinson, Kristine Jones, Belynda D. Hicks, Kathleen Wyatt, Michelle Brotzman, Nicole Gerlanc, Wen-Yi Huang, Paul S. Albert, Nicolas Wentzensen, Christian C. Abnet

published 27 Apr 2023

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Enabling low-cost and robust essentiality studies with high-throughput transposon mutagenesis (HTTM)

Antoine Champie, Amélie De Grandmaison, Simon Jeanneau, Frédéric Grenier, Pierre-Étienne Jacques, Sébastien Rodrigue

published 11 Apr 2023

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Quantification of diversity sampling bias resulting from rice root bacterial isolation on popular and nitrogen-free culture media using 16S amplicon barcoding

Moussa Sondo, Issa Wonni, Agnieszka Klonowska, Kadidia Koïta, Lionel Moulin

published 06 Apr 2023

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Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition

Sarah K. Highlander, Jason M. Wood, John D. Gillece, Megan Folkerts, Viacheslav Fofanov, Tara Furstenau, Nitin K. Singh, Lisa Guan, Arman Seuylemezian, James N. Benardini, David M. Engelthaler, Kasthuri Venkateswaran, Paul S. Keim

published 22 Mar 2023

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A high-throughput newborn screening approach for SCID, SMA, and SCD combining multiplex qPCR and tandem mass spectrometry

Rafael Tesorero, Joachim Janda, Friederike Hörster, Patrik Feyh, Ulrike Mütze, Jana Hauke, Kathrin Schwarz, Joachim B. Kunz, Georg F. Hoffmann, Jürgen G. Okun

published 10 Mar 2023

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Detection of azole-resistant Aspergillus fumigatus in the environment from air, plant debris, compost, and soil

Luisa F. Gómez Londoño, Marin T. Brewer

published 03 Mar 2023

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Microbial community profiling and culturing reveal functional groups of bacteria associated with Thai commercial stingless worker bees (Tetragonula pagdeni)

Chainarong Sinpoo, Ammarin In-on, Nuttapol Noirungsee, Korrawat Attasopa, Panuwan Chantawannakul, Veeranan Chaimanee, Patcharin Phokasem, Tial Cung Ling, Witoon Purahong, Terd Disayathanoowat

published 01 Mar 2023

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Quality analysis of genomic DNA and authentication of fisheries products based on distinct methods of DNA extraction

Ítalo Lutz, Josy Miranda, Paula Santana, Thais Martins, Charles Ferreira, Iracilda Sampaio, Marcelo Vallinoto, Grazielle Evangelista Gomes

published 28 Feb 2023

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Development of a cost-effective, morphology-preserving method for DNA isolation from bulk invertebrate trap catches: Tephritid fruit flies as an exemplar

Elizabeth V. Fowler, Melissa L. Starkie, Xiaocheng Zhu, Alexander M. Piper, Arati Agarwal, Lea Rako, Alexandra Gardiner, Sybilla Oczkowicz, David Gopurenko, Mark K. Schutze, Mark J. Blacket

published 15 Feb 2023

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Gallbladder microbiota in healthy dogs and dogs with mucocele formation

Jody L. Gookin, Ashley N. Hartley, Kathleen M. Aicher, Kyle G. Mathews, Rachel Cullen, John M. Cullen, Benjamin J. Callahan, Devorah M. Stowe, Gabriela S. Seiler, Megan E. Jacob, Jason W. Arnold, M. Andrea Azcarate-Peril, Stephen H. Stauffer

published 10 Feb 2023

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Greater than pH 8: The pH dependence of EDTA as a preservative of high molecular weight DNA in biological samples

Mia L. DeSanctis, Elizabeth A. Soranno, Ella Messner, Ziyu Wang, Elena M. Turner, Rosalia Falco, Hannah J. Appiah-Madson, Daniel L. Distel

published 23 Jan 2023

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New insights from short and long reads sequencing to explore cytochrome b variants in Plasmopara viticola populations collected from vineyards and related to resistance to complex III inhibitors

Semcheddine Cherrad, Benjamin Gillet, Julien Dellinger, Lalie Bellaton, Pascale Roux, Catalina Hernandez, Hervé Steva, Lauriane Perrier, Sébastien Vacher, Sandrine Hughes

published 19 Jan 2023

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