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Data management

Metabolome Based Reaction Graphs of M. tuberculosis and M. leprae: A Comparative Network Analysis

Ketki D. Verkhedkar, Karthik Raman, Nagasuma R. Chandra, Saraswathi Vishveshwara

Dating Phylogenies with Hybrid Local Molecular Clocks

Stéphane Aris-Brosou

An Amphioxus Gli Gene Reveals Conservation of Midline Patterning and the Evolution of Hedgehog Signalling Diversity in Chordates

Sebastian M. Shimeld, Marcel van den Heuvel, Rebecca Dawber, James Briscoe

Beringian Standstill and Spread of Native American Founders

Erika Tamm, Toomas Kivisild, [ ... ], Ripan S. Malhi

Distinguishing Functional Amino Acid Covariation from Background Linkage Disequilibrium in HIV Protease and Reverse Transcriptase

Qi Wang, Christopher Lee

NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence

Morten Nielsen, Claus Lundegaard, [ ... ], Søren Buus

Patterns of Selection in Anti-Malarial Immune Genes in Malaria Vectors: Evidence for Adaptive Evolution in LRIM1 in Anopheles arabiensis

Michel A. Slotman, Aristeidis Parmakelis, [ ... ], Jeffrey R. Powell

Phylogenomics Reshuffles the Eukaryotic Supergroups

Fabien Burki, Kamran Shalchian-Tabrizi, [ ... ], Jan Pawlowski

Expressed Sequence Tags as a Tool for Phylogenetic Analysis of Placental Mammal Evolution

Morgan Kullberg, Björn Hallström, Ulfur Arnason, Axel Janke

Predicting Prokaryotic Ecological Niches Using Genome Sequence Analysis

Garret Suen, Barry S. Goldman, Roy D. Welch

Protistan Diversity in the Arctic: A Case of Paleoclimate Shaping Modern Biodiversity?

Thorsten Stoeck, Jennifer Kasper, [ ... ], Slava Epstein

An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets

Debbie Winter, Ben Vinegar, [ ... ], Nicholas J. Provart

Acoel Flatworms Are Not Platyhelminthes: Evidence from Phylogenomics

Hervé Philippe, Henner Brinkmann, [ ... ], Jaume Baguñà

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