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Computer software

Structural Allele-Specific Patterns Adopted by Epitopes in the MHC-I Cleft and Reconstruction of MHC:peptide Complexes to Cross-Reactivity Assessment

Dinler A. Antunes, Gustavo F. Vieira, [ ... ], José A. B. Chies

Evidence for Alteration of Gene Regulatory Networks through MicroRNAs of the HIV-Infected Brain: Novel Analysis of Retrospective Cases

Erick T. Tatro, Erick R. Scott, [ ... ], Ian P. Everall

A Parallel Implementation of the Network Identification by Multiple Regression (NIR) Algorithm to Reverse-Engineer Regulatory Gene Networks

Francesco Gregoretti, Vincenzo Belcastro, Diego di Bernardo, Gennaro Oliva

Optimization of Duplex Stability and Terminal Asymmetry for shRNA Design

Olga V. Matveeva, Yibin Kang, [ ... ], Svetlana A. Shabalina

BioTorrents: A File Sharing Service for Scientific Data

Morgan G. I. Langille, Jonathan A. Eisen

A Proteomic Approach for the Diagnosis of Bacterial Meningitis

Sarah Jesse, Petra Steinacker, [ ... ], Markus Otto

PGC-1alpha Down-Regulation Affects the Antioxidant Response in Friedreich's Ataxia

Daniele Marmolino, Mario Manto, [ ... ], Massimo Pandolfo

MrGrid: A Portable Grid Based Molecular Replacement Pipeline

Jason W. Schmidberger, Mark A. Bate, [ ... ], Ashley M. Buckle

Deep Sequencing of Target Linkage Assay-Identified Regions in Familial Breast Cancer: Methods, Analysis Pipeline and Troubleshooting

Juan Manuel Rosa-Rosa, Francisco Javier Gracia-Aznárez, [ ... ], Javier Benitez

TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

Jason A. Greenbaum, Erika Assarsson, [ ... ], Bjoern Peters

A Quantitative Image Cytometry Technique for Time Series or Population Analyses of Signaling Networks

Yu-ichi Ozaki, Shinsuke Uda, [ ... ], Shinya Kuroda

Diversity in the Glucose Transporter-4 Gene (SLC2A4) in Humans Reflects the Action of Natural Selection along the Old-World Primates Evolution

Eduardo Tarazona-Santos, Cristina Fabbri, [ ... ], Stephen J. Chanock

Medicaid Coverage for Tobacco Dependence Treatments in Massachusetts and Associated Decreases in Smoking Prevalence

Thomas Land, Donna Warner, [ ... ], Lois Keithly

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