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Computer software

HaTSPiL: A modular pipeline for high-throughput sequencing data analysis

Edoardo Morandi, Matteo Cereda, Danny Incarnato, Caterina Parlato, Giulia Basile, Francesca Anselmi, Andrea Lauria, Lisa Marie Simon, Isabelle Laurence Polignano, Francesca Arruga, Silvia Deaglio, Elisa Tirtei, Franca Fagioli, Salvatore Oliviero

published 15 Oct 2019

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CavBench: A benchmark for protein cavity detection methods

Sérgio Dias, Tiago Simões, Francisco Fernandes, Ana Mafalda Martins, Alfredo Ferreira, Joaquim Jorge, Abel J. P. Gomes

published 14 Oct 2019

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A psychoacoustic application for the adjustment of electrical hearing thresholds in cochlear implant patients

Johannes Plesch, Benjamin P. Ernst, Sebastian Strieth, Tobias Rader

published 11 Oct 2019

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cgmanalysis: An R package for descriptive analysis of continuous glucose monitor data

Tim Vigers, Christine L. Chan, Janet Snell-Bergeon, Petter Bjornstad, Philip S. Zeitler, Gregory Forlenza, Laura Pyle

published 11 Oct 2019

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Comparison of transcriptomes of an orthotospovirus vector and non-vector thrips species

Anita Shrestha, Donald E. Champagne, Albert K. Culbreath, Mark R. Abney, Rajagopalbabu Srinivasan

published 10 Oct 2019

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Single session high definition transcranial direct current stimulation to the cerebellum does not impact higher cognitive function

Ted Maldonado, James R. M. Goen, Michael J. Imburgio, Sydney M. Eakin, Jessica A. Bernard

published 10 Oct 2019

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Research on OpenCL optimization for FPGA deep learning application

Shuo Zhang, Yanxia Wu, Chaoguang Men, Hongtao He, Kai Liang

published 10 Oct 2019

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The feasibility of using citizens to segment anatomy from medical images: Accuracy and motivation

Judith R. Meakin, Ryan M. Ames, J. Charles G. Jeynes, Jo Welsman, Michael Gundry, Karen Knapp, Richard Everson

published 10 Oct 2019

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A novel short-term high-lactose culture approach combined with a matrix-assisted laser desorption ionization-time of flight mass spectrometry assay for differentiating Escherichia coli and Shigella species using artificial neural networks

Jin Ling, Hong Wang, Gaomin Li, Zhen Feng, Yufei Song, Peng Wang, Hong Shao, Hu Zhou, Gang Chen

published 08 Oct 2019

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Joint emulation of Earth System Model temperature-precipitation realizations with internal variability and space-time and cross-variable correlation: fldgen v2.0 software description

Abigail Snyder, Robert Link, Kalyn Dorheim, Ben Kravitz, Ben Bond-Lamberty, Corinne Hartin

published 04 Oct 2019

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Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil

Lucas Dantas Lopes, Alexandra J. Weisberg, Edward W. Davis II, Camila de S. Varize, Michele de C. Pereira e Silva, Jeff H. Chang, Joyce E. Loper, Fernando D. Andreote

published 03 Oct 2019

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Soil erosion and corn yield in a cultivated catchment of the Chinese Mollisol region

Weige Yang, Xiaocun Zhang, Wei Gong, Yuanyuan Ye, Yongsheng Yang

published 03 Oct 2019

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Computational screening of antimicrobial peptides for Acinetobacter baumannii

Ayan Majumder, Malay Ranjan Biswal, Meher K. Prakash

published 02 Oct 2019

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