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Computer applications

StochPy: A Comprehensive, User-Friendly Tool for Simulating Stochastic Biological Processes

Timo R. Maarleveld, Brett G. Olivier, Frank J. Bruggeman

Using a Web-Based Application to Define the Accuracy of Diagnostic Tests When the Gold Standard Is Imperfect

Cherry Lim, Prapass Wannapinij, [ ... ], Direk Limmathurotsakul

C-PAmP: Large Scale Analysis and Database Construction Containing High Scoring Computationally Predicted Antimicrobial Peptides for All the Available Plant Species

Anastasia Niarchou, Anastasia Alexandridou, Emmanouil Athanasiadis, George Spyrou

SIDD: A Semantically Integrated Database towards a Global View of Human Disease

Liang Cheng, Guohua Wang, [ ... ], Yadong Wang

A Generalized Model to Estimate the Statistical Power in Mitochondrial Disease Studies Involving 2×k Tables

Jacobo Pardo-Seco, Jorge Amigo, Wenceslao González-Manteiga, Antonio Salas

Embedding and Publishing Interactive, 3-Dimensional, Scientific Figures in Portable Document Format (PDF) Files

David G. Barnes, Michail Vidiassov, [ ... ], Colin R. McHenry

Contact Geometry Affects Lesion Formation in Radio-Frequency Cardiac Catheter Ablation

Neal Gallagher, Elise C. Fear, Israel A. Byrd, Edward J. Vigmond

Organism-Specific rRNA Capture System for Application in Next-Generation Sequencing

Sai-Kam Li, Jun-Wei Zhou, [ ... ], Terrence Chi-Kong Lau

SurvExpress: An Online Biomarker Validation Tool and Database for Cancer Gene Expression Data Using Survival Analysis

Raul Aguirre-Gamboa, Hugo Gomez-Rueda, [ ... ], Victor Treviño

A Hierarchical Coarse-Grained (All-Atom-to-All-Residue) Computer Simulation Approach: Self-Assembly of Peptides

Ras B. Pandey, Zhifeng Kuang, Barry L. Farmer

GobyWeb: Simplified Management and Analysis of Gene Expression and DNA Methylation Sequencing Data

Kevin C. Dorff, Nyasha Chambwe, [ ... ], Fabien Campagne

Simplified Method for Predicting a Functional Class of Proteins in Transcription Factor Complexes

Marek J. Piatek, Michael C. Schramm, [ ... ], Vladimir B. Bajic

RMOD: A Tool for Regulatory Motif Detection in Signaling Network

Jinki Kim, Gwan-Su Yi

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