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Computational techniques

Highly Sensitive Detection of Individual HEAT and ARM Repeats with HHpred and COACH

Fred Kippert, Dietlind L. Gerloff

published 24 Sep 2009

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Prediction and Experimental Validation of Novel STAT3 Target Genes in Human Cancer Cells

Young Min Oh, Jong Kyoung Kim, Yongwook Choi, Seungjin Choi, Joo-Yeon Yoo

published 04 Sep 2009

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Evolutionary Modeling and Prediction of Non-Coding RNAs in Drosophila

Robert K. Bradley, Andrew V. Uzilov, Mitchell E. Skinner, Yuri R. Bendaña, Lars Barquist, Ian Holmes

published 11 Aug 2009

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Long-Range Correlations in Rectal Temperature Fluctuations of Healthy Infants during Maturation

Georgette Stern, Julia Beel, Béla Suki, Mike Silverman, Jenny Westaway, Mateja Cernelc, David Baldwin, Urs Frey

published 29 Jul 2009

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Correlated Mutation Analysis on the Catalytic Domains of Serine/Threonine Protein Kinases

Feng Xu, Pan Du, Hongbo Shen, Hairong Hu, Qi Wu, Jun Xie, Long Yu

published 15 Jun 2009

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Functional Equivalency Inferred from “Authoritative Sources” in Networks of Homologous Proteins

Shreedhar Natarajan, Eric Jakobsson

published 12 Jun 2009

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Gene Classification Based on Amino Acid Motifs and Residues: The DLX (distal-less) Test Case

Nuno A. Fonseca, Cristina P. Vieira, Jorge Vieira

published 01 Jun 2009

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Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, Ramy Arnaout, Carsten Russ, Chien-Chi Lo, Thomas Leitner, Brian Gaschen, James Theiler, Roger Paredes, Zhaohui Su, Michael D. Hughes, Roy M. Gulick, Wayne Greaves, Eoin Coakley, Charles Flexner, Chad Nusbaum, Daniel R. Kuritzkes

published 25 May 2009

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smyRNA: A Novel Ab Initio ncRNA Gene Finder

Raheleh Salari, Cagri Aksay, Emre Karakoc, Peter J. Unrau, Iman Hajirasouliha, S. Cenk Sahinalp

published 05 May 2009

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Repertoire of microRNAs in Epithelial Ovarian Cancer as Determined by Next Generation Sequencing of Small RNA cDNA Libraries

Stacia K. Wyman, Rachael K. Parkin, Patrick S. Mitchell, Brian R. Fritz, Kathy O'Briant, Andrew K. Godwin, Nicole Urban, Charles W. Drescher, Beatrice S. Knudsen, Muneesh Tewari

published 23 Apr 2009

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An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, Sheila M. Dreher-Lesnick, M. Sayeedur Rahman, Micah J. Worley, Joao C. Setubal, Bruno S. Sobral, Abdu F. Azad

published 12 Mar 2009

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The Action of Key Factors in Protein Evolution at High Temporal Resolution

Armin Schmitt, Johannes Schuchhardt, Gudrun A. Brockmann

published 12 Mar 2009

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Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

published 10 Mar 2009

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