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Computational techniques

Robust Computational Analysis of rRNA Hypervariable Tag Datasets

Maksim Sipos, Patricio Jeraldo, Nicholas Chia, Ani Qu, A. Singh Dhillon, Michael E. Konkel, Karen E. Nelson, Bryan A. White, Nigel Goldenfeld

published 31 Dec 2010

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The Bacterial Intimins and Invasins: A Large and Novel Family of Secreted Proteins

Jennifer C. Tsai, Ming-Ren Yen, Rostislav Castillo, Denisse L. Leyton, Ian R. Henderson, Milton H. Saier Jr

published 22 Dec 2010

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MPI-PHYLIP: Parallelizing Computationally Intensive Phylogenetic Analysis Routines for the Analysis of Large Protein Families

Alexander J. Ropelewski, Hugh B. Nicholas Jr, Ricardo R. Gonzalez Mendez

published 15 Nov 2010

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Structural Relationships in the Lysozyme Superfamily: Significant Evidence for Glycoside Hydrolase Signature Motifs

Alexandre Wohlkönig, Joëlle Huet, Yvan Looze, René Wintjens

published 09 Nov 2010

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HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

Michelle T. Dimon, Katherine Sorber, Joseph L. DeRisi

published 08 Nov 2010

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The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies

Mattia C. F. Prosperi, Andrea De Luca, Simona Di Giambenedetto, Laura Bracciale, Massimiliano Fabbiani, Roberto Cauda, Marco Salemi

published 25 Oct 2010

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Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding

Yoojin Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum

published 22 Oct 2010

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Correlation Analysis for Protein Evolutionary Family Based on Amino Acid Position Mutations and Application in PDZ Domain

Qi-Shi Du, Cheng-Hua Wang, Si-Ming Liao, Ri-Bo Huang

published 06 Oct 2010

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Insight into Antigenic Diversity of VAR2CSA-DBL5ε Domain from Multiple Plasmodium falciparum Placental Isolates

Sédami Gnidehou, Leon Jessen, Stéphane Gangnard, Caroline Ermont, Choukri Triqui, Mickael Quiviger, Juliette Guitard, Ole Lund, Philippe Deloron, Nicaise Tuikue Ndam

published 01 Oct 2010

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Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline

Ivo Dinov, Kamen Lozev, Petros Petrosyan, Zhizhong Liu, Paul Eggert, Jonathan Pierce, Alen Zamanyan, Shruthi Chakrapani, John Van Horn, D. Stott Parker, Rico Magsipoc, Kelvin Leung, Boris Gutman, Roger Woods, Arthur Toga

published 28 Sep 2010

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Adjacent Nucleotide Dependence in ncRNA and Order-1 SCFG for ncRNA Identification

Thomas K. F. Wong, Tak-Wah Lam, Wing-Kin Sung, Siu-Ming Yiu

published 28 Sep 2010

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Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

Kris Popendorf, Hachiya Tsuyoshi, Yasunori Osana, Yasubumi Sakakibara

published 24 Sep 2010

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Cheminformatics-Based Drug Design Approach for Identification of Inhibitors Targeting the Characteristic Residues of MMP-13 Hemopexin Domain

Roopa Kothapalli, Asif M. Khan, Basappa, Anupriya Gopalsamy, Yap Seng Chong, Loganath Annamalai

published 31 Aug 2010

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