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Computational techniques

Prediction and Experimental Validation of Novel STAT3 Target Genes in Human Cancer Cells

Young Min Oh, Jong Kyoung Kim, [ ... ], Joo-Yeon Yoo

Evolutionary Modeling and Prediction of Non-Coding RNAs in Drosophila

Robert K. Bradley, Andrew V. Uzilov, [ ... ], Ian Holmes

Long-Range Correlations in Rectal Temperature Fluctuations of Healthy Infants during Maturation

Georgette Stern, Julia Beel, [ ... ], Urs Frey

Correlated Mutation Analysis on the Catalytic Domains of Serine/Threonine Protein Kinases

Feng Xu, Pan Du, [ ... ], Long Yu

Functional Equivalency Inferred from “Authoritative Sources” in Networks of Homologous Proteins

Shreedhar Natarajan, Eric Jakobsson

Gene Classification Based on Amino Acid Motifs and Residues: The DLX (distal-less) Test Case

Nuno A. Fonseca, Cristina P. Vieira, Jorge Vieira

Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In Vivo

Athe M. N. Tsibris, Bette Korber, [ ... ], Daniel R. Kuritzkes

smyRNA: A Novel Ab Initio ncRNA Gene Finder

Raheleh Salari, Cagri Aksay, [ ... ], S. Cenk Sahinalp

Repertoire of microRNAs in Epithelial Ovarian Cancer as Determined by Next Generation Sequencing of Small RNA cDNA Libraries

Stacia K. Wyman, Rachael K. Parkin, [ ... ], Muneesh Tewari

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, [ ... ], Abdu F. Azad

The Action of Key Factors in Protein Evolution at High Temporal Resolution

Armin Schmitt, Johannes Schuchhardt, Gudrun A. Brockmann

Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

Computing Highly Correlated Positions Using Mutual Information and Graph Theory for G Protein-Coupled Receptors

Sarosh N. Fatakia, Stefano Costanzi, Carson C. Chow

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