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Computational techniques

Tasting Soil Fungal Diversity with Earth Tongues: Phylogenetic Test of SATé Alignments for Environmental ITS Data

Zheng Wang, R. Henrik Nilsson, Francesc Lopez-Giraldez, Wen-ying Zhuang, Yu-cheng Dai, Peter R. Johnston, Jeffrey P. Townsend

published 21 Apr 2011

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A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

Julie D. Thompson, Benjamin Linard, Odile Lecompte, Olivier Poch

published 31 Mar 2011

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A Computational Model of the LGI1 Protein Suggests a Common Binding Site for ADAM Proteins

Emanuela Leonardi, Simonetta Andreazza, Stefano Vanin, Giorgia Busolin, Carlo Nobile, Silvio C. E. Tosatto

published 29 Mar 2011

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Noise and Complexity in Human Postural Control: Interpreting the Different Estimations of Entropy

Christopher K. Rhea, Tobin A. Silver, S. Lee Hong, Joong Hyun Ryu, Breanna E. Studenka, Charmayne M. L. Hughes, Jeffrey M. Haddad

published 17 Mar 2011

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A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes

Lee T. Sam, Doron Lipson, Tal Raz, Xuhong Cao, John Thompson, Patrice M. Milos, Dan Robinson, Arul M. Chinnaiyan, Chandan Kumar-Sinha, Christopher A. Maher

published 01 Mar 2011

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Exploring the Evolutionary Relationship of Insulin Receptor Substrate Family Using Computational Biology

Chiranjib Chakraborty, Govindasamy Agoramoorthy, Minna J. Hsu

published 25 Feb 2011

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Generalized Centroid Estimators in Bioinformatics

Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai

published 18 Feb 2011

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An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

Eloi Mercier, Arnaud Droit, Leping Li, Gordon Robertson, Xuekui Zhang, Raphael Gottardo

published 16 Feb 2011

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Error and Error Mitigation in Low-Coverage Genome Assemblies

Melissa J. Hubisz, Michael F. Lin, Manolis Kellis, Adam Siepel

published 14 Feb 2011

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Considering Transposable Element Diversification in De Novo Annotation Approaches

Timothée Flutre, Elodie Duprat, Catherine Feuillet, Hadi Quesneville

published 31 Jan 2011

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Odorant Binding Proteins of the Red Imported Fire Ant, Solenopsis invicta: An Example of the Problems Facing the Analysis of Widely Divergent Proteins

Dietrich Gotzek, Hugh M. Robertson, Yannick Wurm, DeWayne Shoemaker

published 31 Jan 2011

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Sequence Alignment, Mutual Information, and Dissimilarity Measures for Constructing Phylogenies

Orion Penner, Peter Grassberger, Maya Paczuski

published 04 Jan 2011

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Evolutionary Distances in the Twilight Zone—A Rational Kernel Approach

Roland F. Schwarz, William Fletcher, Frank Förster, Benjamin Merget, Matthias Wolf, Jörg Schultz, Florian Markowetz

published 31 Dec 2010

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