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Computational techniques

Structural Position Correlation Analysis (SPCA) for Protein Family

Qi-Shi Du, Jian-Zong Meng, Cheng-Hua Wang, Si-Yu Long, Ri-Bo Huang

published 05 Dec 2011

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Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, Jia-Ming Chang, Ting-Yi Sung, Wen-Lian Hsu

published 02 Dec 2011

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On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

published 30 Nov 2011

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RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

published 21 Nov 2011

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Sequence-Based Classification Using Discriminatory Motif Feature Selection

Hao Xiong, Daniel Capurso, Śaunak Sen, Mark R. Segal

published 10 Nov 2011

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Phylogenetic and Complementation Analysis of a Single-Stranded DNA Binding Protein Family from Lactococcal Phages Indicates a Non-Bacterial Origin

Agnieszka K. Szczepankowska, Eric Prestel, Mahendra Mariadassou, Jacek K. Bardowski, Elena Bidnenko

published 04 Nov 2011

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Multichannel Detrended Fluctuation Analysis Reveals Synchronized Patterns of Spontaneous Spinal Activity in Anesthetized Cats

Erika E. Rodríguez, Enrique Hernández-Lemus, Benjamín A. Itzá-Ortiz, Ismael Jiménez, Pablo Rudomín

published 27 Oct 2011

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An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, Pedro I. Hidalgo-Yanes, Yunierkis Pérez-Castillo, Reinaldo Molina-Ruiz, Kathleen Marchal, Vítor Vasconcelos, Agostinho Antunes

published 26 Oct 2011

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The Nature and Perception of Fluctuations in Human Musical Rhythms

Holger Hennig, Ragnar Fleischmann, Anneke Fredebohm, York Hagmayer, Jan Nagler, Annette Witt, Fabian J. Theis, Theo Geisel

published 26 Oct 2011

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Adaptive Evolution of Cooperation through Darwinian Dynamics in Public Goods Games

Kuiying Deng, Tianguang Chu

published 25 Oct 2011

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Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing

Samuel V. Angiuoli, James R. White, Malcolm Matalka, Owen White, W. Florian Fricke

published 19 Oct 2011

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Identification of a Conserved Anti-Apoptotic Protein That Modulates the Mitochondrial Apoptosis Pathway

Yu Zhang, Elisabet Johansson, Marian L. Miller, Reiner U. Jänicke, Donald J. Ferguson, David Plas, Jarek Meller, Marshall W. Anderson

published 30 Sep 2011

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An α/β Hydrolase and Associated Per-ARNT-Sim Domain Comprise a Bipartite Sensing Module Coupled with Diverse Output Domains

Eugene V. Nadezhdin, Margaret S. Brody, Chester W. Price

published 29 Sep 2011

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