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Computational techniques

Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families

Lucas Bleicher, Ney Lemke, Richard Charles Garratt

published 20 Dec 2011

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GlyGly-CTERM and Rhombosortase: A C-Terminal Protein Processing Signal in a Many-to-One Pairing with a Rhomboid Family Intramembrane Serine Protease

Daniel H. Haft, Neha Varghese

published 14 Dec 2011

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Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

published 12 Dec 2011

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Identifying Hosts of Families of Viruses: A Machine Learning Approach

Anil Raj, Michael Dewar, Gustavo Palacios, Raul Rabadan, Christopher H. Wiggins

published 09 Dec 2011

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Structural Position Correlation Analysis (SPCA) for Protein Family

Qi-Shi Du, Jian-Zong Meng, Cheng-Hua Wang, Si-Yu Long, Ri-Bo Huang

published 05 Dec 2011

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Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, Jia-Ming Chang, Ting-Yi Sung, Wen-Lian Hsu

published 02 Dec 2011

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On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

published 30 Nov 2011

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RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

published 21 Nov 2011

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Sequence-Based Classification Using Discriminatory Motif Feature Selection

Hao Xiong, Daniel Capurso, Śaunak Sen, Mark R. Segal

published 10 Nov 2011

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Phylogenetic and Complementation Analysis of a Single-Stranded DNA Binding Protein Family from Lactococcal Phages Indicates a Non-Bacterial Origin

Agnieszka K. Szczepankowska, Eric Prestel, Mahendra Mariadassou, Jacek K. Bardowski, Elena Bidnenko

published 04 Nov 2011

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Multichannel Detrended Fluctuation Analysis Reveals Synchronized Patterns of Spontaneous Spinal Activity in Anesthetized Cats

Erika E. Rodríguez, Enrique Hernández-Lemus, Benjamín A. Itzá-Ortiz, Ismael Jiménez, Pablo Rudomín

published 27 Oct 2011

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An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, Pedro I. Hidalgo-Yanes, Yunierkis Pérez-Castillo, Reinaldo Molina-Ruiz, Kathleen Marchal, Vítor Vasconcelos, Agostinho Antunes

published 26 Oct 2011

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The Nature and Perception of Fluctuations in Human Musical Rhythms

Holger Hennig, Ragnar Fleischmann, Anneke Fredebohm, York Hagmayer, Jan Nagler, Annette Witt, Fabian J. Theis, Theo Geisel

published 26 Oct 2011

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