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Computational techniques

Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families

Lucas Bleicher, Ney Lemke, Richard Charles Garratt

GlyGly-CTERM and Rhombosortase: A C-Terminal Protein Processing Signal in a Many-to-One Pairing with a Rhomboid Family Intramembrane Serine Protease

Daniel H. Haft, Neha Varghese

Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

Identifying Hosts of Families of Viruses: A Machine Learning Approach

Anil Raj, Michael Dewar, [ ... ], Christopher H. Wiggins

Structural Position Correlation Analysis (SPCA) for Protein Family

Qi-Shi Du, Jian-Zong Meng, [ ... ], Ri-Bo Huang

Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, [ ... ], Wen-Lian Hsu

On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

Sequence-Based Classification Using Discriminatory Motif Feature Selection

Hao Xiong, Daniel Capurso, Śaunak Sen, Mark R. Segal

Phylogenetic and Complementation Analysis of a Single-Stranded DNA Binding Protein Family from Lactococcal Phages Indicates a Non-Bacterial Origin

Agnieszka K. Szczepankowska, Eric Prestel, [ ... ], Elena Bidnenko

Multichannel Detrended Fluctuation Analysis Reveals Synchronized Patterns of Spontaneous Spinal Activity in Anesthetized Cats

Erika E. Rodríguez, Enrique Hernández-Lemus, [ ... ], Pablo Rudomín

An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, [ ... ], Agostinho Antunes

The Nature and Perception of Fluctuations in Human Musical Rhythms

Holger Hennig, Ragnar Fleischmann, [ ... ], Theo Geisel

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