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Computational techniques

Classification of the Adenylation and Acyl-Transferase Activity of NRPS and PKS Systems Using Ensembles of Substrate Specific Hidden Markov Models

Barzan I. Khayatt, Lex Overmars, Roland J. Siezen, Christof Francke

published 18 Apr 2013

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An Improved Swarm Optimization for Parameter Estimation and Biological Model Selection

Afnizanfaizal Abdullah, Safaai Deris, Mohd Saberi Mohamad, Sohail Anwar

published 11 Apr 2013

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Interferon-Lambda3 (IFN-λ3) and Its Cognate Receptor Subunits in Tree Shrews (Tupaia belangeri): Genomic Sequence Retrieval, Molecular Identification and Expression Analysis

Ming-Li Li, Wen-Wen Xu, Yue-Dong Gao, Yan Guo, Wen-Ju Wang, Chao Wang, Shi-You Jiang, Andrew Willden, Jing-Fei Huang, Hua-Tang Zhang

published 28 Mar 2013

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Assessing the Consequences of Denoising Marker-Based Metagenomic Data

John M. Gaspar, W. Kelley Thomas

published 25 Mar 2013

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Comparative Studies of Copy Number Variation Detection Methods for Next-Generation Sequencing Technologies

Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng, Yu-Ping Wang

published 20 Mar 2013

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Visual to Parametric Interaction (V2PI)

Scotland C. Leman, Leanna House, Dipayan Maiti, Alex Endert, Chris North

published 20 Mar 2013

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A Small Set of Succinct Signature Patterns Distinguishes Chinese and Non-Chinese HIV-1 Genomes

Yan Wang, Reda Rawi, Christoph Wilms, Dominik Heider, Rongge Yang, Daniel Hoffmann

published 19 Mar 2013

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DendroBLAST: Approximate Phylogenetic Trees in the Absence of Multiple Sequence Alignments

Steven Kelly, Philip K. Maini

published 15 Mar 2013

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Automatically Generated Algorithms for the Vertex Coloring Problem

Carlos Contreras Bolton, Gustavo Gatica, Víctor Parada

published 13 Mar 2013

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The Evolution and Diversity of SALMFamide Neuropeptides

Maurice R. Elphick, Sufyan Achhala, Natalia Martynyuk

published 11 Mar 2013

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PSimScan: Algorithm and Utility for Fast Protein Similarity Search

Anna Kaznadzey, Natalia Alexandrova, Vladimir Novichkov, Denis Kaznadzey

published 07 Mar 2013

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Alignment of Helical Membrane Protein Sequences Using AlignMe

Marcus Stamm, René Staritzbichler, Kamil Khafizov, Lucy R. Forrest

published 04 Mar 2013

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An Evolutionary Firefly Algorithm for the Estimation of Nonlinear Biological Model Parameters

Afnizanfaizal Abdullah, Safaai Deris, Sohail Anwar, Satya N. V. Arjunan

published 04 Mar 2013

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