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Computational techniques

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

Guorong Xu, Michael J. Strong, Michelle R. Lacey, Carl Baribault, Erik K. Flemington, Christopher M. Taylor

published 25 Feb 2014

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QuickProbs—A Fast Multiple Sequence Alignment Algorithm Designed for Graphics Processors

Adam Gudyś, Sebastian Deorowicz

published 25 Feb 2014

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A Semi-Automated Pipeline for the Segmentation of Rhesus Macaque Hippocampus: Validation across a Wide Age Range

Michael R. Hunsaker, David G. Amaral

published 24 Feb 2014

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How to Make a Synthetic Multicellular Computer

Javier Macia, Ricard Sole

published 19 Feb 2014

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Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks

Anna Kreshuk, Ullrich Koethe, Elizabeth Pax, Davi D. Bock, Fred A. Hamprecht

published 06 Feb 2014

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A Deterministic Analysis of Genome Integrity during Neoplastic Growth in Drosophila

Cem Sievers, Federico Comoglio, Makiko Seimiya, Gunter Merdes, Renato Paro

published 06 Feb 2014

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Ultra Deep Sequencing of Listeria monocytogenes sRNA Transcriptome Revealed New Antisense RNAs

Sebastian Behrens, Stefanie Widder, Gopala Krishna Mannala, Xiaoxing Qing, Ramakanth Madhugiri, Nathalie Kefer, Mobarak Abu Mraheil, Thomas Rattei, Torsten Hain

published 03 Feb 2014

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Artificial Evolution by Viability Rather than Competition

Andrea Maesani, Pradeep Ruben Fernando, Dario Floreano

published 29 Jan 2014

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Accurate Data Processing Improves the Reliability of Affymetrix Gene Expression Profiles from FFPE Samples

Maurizio Callari, Antonio Lembo, Giampaolo Bianchini, Valeria Musella, Vera Cappelletti, Luca Gianni, Maria Grazia Daidone, Paolo Provero

published 29 Jan 2014

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The Receptor for Advanced Glycation End-Products (RAGE) Is Only Present in Mammals, and Belongs to a Family of Cell Adhesion Molecules (CAMs)

Luca Sessa, Elena Gatti, Filippo Zeni, Antonella Antonelli, Alessandro Catucci, Michael Koch, Giulio Pompilio, Günter Fritz, Angela Raucci, Marco E. Bianchi

published 27 Jan 2014

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Detrended Fluctuation Analysis and Adaptive Fractal Analysis of Stride Time Data in Parkinson's Disease: Stitching Together Short Gait Trials

Marietta Kirchner, Patric Schubert, Magnus Liebherr, Christian T. Haas

published 23 Jan 2014

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CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

published 22 Jan 2014

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Bioinformatics Analysis of Bacterial Annexins – Putative Ancestral Relatives of Eukaryotic Annexins

Praveen Kumar Kodavali, Małgorzata Dudkiewicz, Sławomir Pikuła, Krzysztof Pawłowski

published 16 Jan 2014

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