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Computational techniques

QuickProbs—A Fast Multiple Sequence Alignment Algorithm Designed for Graphics Processors

Adam Gudyś, Sebastian Deorowicz

A Semi-Automated Pipeline for the Segmentation of Rhesus Macaque Hippocampus: Validation across a Wide Age Range

Michael R. Hunsaker, David G. Amaral

How to Make a Synthetic Multicellular Computer

Javier Macia, Ricard Sole

Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks

Anna Kreshuk, Ullrich Koethe, [ ... ], Fred A. Hamprecht

A Deterministic Analysis of Genome Integrity during Neoplastic Growth in Drosophila

Cem Sievers, Federico Comoglio, [ ... ], Renato Paro

Ultra Deep Sequencing of Listeria monocytogenes sRNA Transcriptome Revealed New Antisense RNAs

Sebastian Behrens, Stefanie Widder, [ ... ], Torsten Hain

Artificial Evolution by Viability Rather than Competition

Andrea Maesani, Pradeep Ruben Fernando, Dario Floreano

Accurate Data Processing Improves the Reliability of Affymetrix Gene Expression Profiles from FFPE Samples

Maurizio Callari, Antonio Lembo, [ ... ], Paolo Provero

The Receptor for Advanced Glycation End-Products (RAGE) Is Only Present in Mammals, and Belongs to a Family of Cell Adhesion Molecules (CAMs)

Luca Sessa, Elena Gatti, [ ... ], Marco E. Bianchi

Detrended Fluctuation Analysis and Adaptive Fractal Analysis of Stride Time Data in Parkinson's Disease: Stitching Together Short Gait Trials

Marietta Kirchner, Patric Schubert, Magnus Liebherr, Christian T. Haas

CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

Bioinformatics Analysis of Bacterial Annexins – Putative Ancestral Relatives of Eukaryotic Annexins

Praveen Kumar Kodavali, Małgorzata Dudkiewicz, Sławomir Pikuła, Krzysztof Pawłowski

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, [ ... ], Joel T. Dudley

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