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Computational techniques

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

Brejnev Muhizi Muhire, Arvind Varsani, Darren Patrick Martin

Novel Bacterial Taxa in the Human Microbiome

Kristine M. Wylie, Rebecca M. Truty, [ ... ], Katherine S. Pollard

TreeCluster: Clustering biological sequences using phylogenetic trees

Metin Balaban, Niema Moshiri, [ ... ], Siavash Mirarab

From invisibility to readability: Recovering the ink of Herculaneum

Clifford Seth Parker, Stephen Parsons, [ ... ], William Brent Seales

Bovine Polledness – An Autosomal Dominant Trait with Allelic Heterogeneity

Ivica Medugorac, Doris Seichter, [ ... ], Stefan Krebs

Considering Transposable Element Diversification in De Novo Annotation Approaches

Timothée Flutre, Elodie Duprat, Catherine Feuillet, Hadi Quesneville

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, [ ... ], Ségolène Caboche

Two Novel Heat-Soluble Protein Families Abundantly Expressed in an Anhydrobiotic Tardigrade

Ayami Yamaguchi, Sae Tanaka, [ ... ], Takekazu Kunieda

An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)

Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment

Jason Li, Maria A. Doyle, [ ... ], Richard W. Tothill

Reinforcement learning produces dominant strategies for the Iterated Prisoner’s Dilemma

Marc Harper, Vincent Knight, [ ... ], Owen Campbell

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, [ ... ], Joel T. Dudley

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