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Computational pipelines

SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework

Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars

published 05 Dec 2019

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A feature selection strategy for gene expression time series experiments with hidden Markov models

Roberto A. Cárdenas-Ovando, Edith A. Fernández-Figueroa, Héctor A. Rueda-Zárate, Julieta Noguez, Claudia Rangel-Escareño

published 10 Oct 2019

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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Juhana I. Kammonen, Olli-Pekka Smolander, Lars Paulin, Pedro A. B. Pereira, Pia Laine, Patrik Koskinen, Jukka Jernvall, Petri Auvinen

published 09 Sep 2019

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Cardiovascular disease risk prediction using automated machine learning: A prospective study of 423,604 UK Biobank participants

Ahmed M. Alaa, Thomas Bolton, Emanuele Di Angelantonio, James H. F. Rudd, Mihaela van der Schaar

published 15 May 2019

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From invisibility to readability: Recovering the ink of Herculaneum

Clifford Seth Parker, Stephen Parsons, Jack Bandy, Christy Chapman, Frederik Coppens, William Brent Seales

published 08 May 2019

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elPrep 4: A multithreaded framework for sequence analysis

Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Wilfried Verachtert

published 13 Feb 2019

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An improved machine learning pipeline for urinary volatiles disease detection: Diagnosing diabetes

Andrea S. Martinez-Vernon, James A. Covington, Ramesh P. Arasaradnam, Siavash Esfahani, Nicola O’Connell, Ioannis Kyrou, Richard S. Savage

published 27 Sep 2018

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Automated measurement of fetal head circumference using 2D ultrasound images

Thomas L. A. van den Heuvel, Dagmar de Bruijn, Chris L. de Korte, Bram van Ginneken

published 23 Aug 2018

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An efficient control flow validation method using redundant computing capacity of dual-processor architecture

Qingran Wang, Wei Guo, Jizeng Wei

published 01 Aug 2018

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Atlas pre-selection strategies to enhance the efficiency and accuracy of multi-atlas brain segmentation tools

Chenfei Ye, Ting Ma, Dan Wu, Can Ceritoglu, Michael I. Miller, Susumu Mori

published 27 Jul 2018

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Ffuzz: Towards full system high coverage fuzz testing on binary executables

Bin Zhang, Jiaxi Ye, Xing Bi, Chao Feng, Chaojing Tang

published 23 May 2018

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Numerical research on the lateral global buckling characteristics of a high temperature and pressure pipeline with two initial imperfections

Wenbin Liu, Aimin Liu

published 19 Mar 2018

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Accurately tracking single-cell movement trajectories in microfluidic cell sorting devices

Jenny Jeong, Nicholas J. Frohberg, Enlu Zhou, Todd Sulchek, Peng Qiu

published 07 Feb 2018

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