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Computational pipelines

OXSA: An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB

Lucian A. B. Purvis, William T. Clarke, Luca Biasiolli, Ladislav Valkovič, Matthew D. Robson, Christopher T. Rodgers

published 22 Sep 2017

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A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations

Salome Horsch, Dominik Kopczynski, Elias Kuthe, Jörg Ingo Baumbach, Sven Rahmann, Jörg Rahnenführer

published 14 Sep 2017

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RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses

Bajuna Rashid Salehe, Chris Ian Jones, Giuseppe Di Fatta, Liam James McGuffin

published 25 Apr 2017

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Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce

Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier

published 30 Mar 2017

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Solving global shallow water equations on heterogeneous supercomputers

Haohuan Fu, Lin Gan, Chao Yang, Wei Xue, Lanning Wang, Xinliang Wang, Xiaomeng Huang, Guangwen Yang

published 10 Mar 2017

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Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, Yves Lemoine, David Hot, Christophe Audebert, Ségolène Caboche

published 04 Jan 2017

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A Scalable Data Access Layer to Manage Structured Heterogeneous Biomedical Data

Giovanni Delussu, Luca Lianas, Francesca Frexia, Gianluigi Zanetti

published 09 Dec 2016

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Sam2bam: High-Performance Framework for NGS Data Preprocessing Tools

Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng

published 18 Nov 2016

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A New Feedback-Based Method for Parameter Adaptation in Image Processing Routines

Arif ul Maula Khan, Ralf Mikut, Markus Reischl

published 20 Oct 2016

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A Pipelined Non-Deterministic Finite Automaton-Based String Matching Scheme Using Merged State Transitions in an FPGA

HyunJin Kim, Kang-Il Choi

published 03 Oct 2016

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MetaStorm: A Public Resource for Customizable Metagenomics Annotation

Gustavo Arango-Argoty, Gargi Singh, Lenwood S. Heath, Amy Pruden, Weidong Xiao, Liqing Zhang

published 15 Sep 2016

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Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study

Stefano Di Carlo, Elena Rossi, Gianfranco Politano, Simona Inghilleri, Patrizia Morbini, Fiorella Calabrese, Alfredo Benso, Alessandro Savino, Emanuela Cova, Davide Zampieri, Federica Meloni

published 26 Aug 2016

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Preconditioning 2D Integer Data for Fast Convex Hull Computations

José Oswaldo Cadenas, Graham M. Megson, Cris L. Luengo Hendriks

published 03 Mar 2016

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