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Computational pipelines

Accurately tracking single-cell movement trajectories in microfluidic cell sorting devices

Jenny Jeong, Nicholas J. Frohberg, Enlu Zhou, Todd Sulchek, Peng Qiu

published 07 Feb 2018

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White matter tract-specific quantitative analysis in multiple sclerosis: Comparison of optic radiation reconstruction techniques

Chenyu Wang, Alexander Klistorner, Linda Ly, Michael H. Barnett

published 17 Jan 2018

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Automated segmentation of complex patterns in biological tissues: Lessons from stingray tessellated cartilage

David Knötel, Ronald Seidel, Steffen Prohaska, Mason N. Dean, Daniel Baum

published 13 Dec 2017

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A functional pipeline framework for landmark identification on 3D surface extracted from volumetric data

Pan Zheng, Bahari Belaton, Iman Yi Liao, Zainul Ahmad Rajion

published 09 Nov 2017

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Fuzzy-based propagation of prior knowledge to improve large-scale image analysis pipelines

Johannes Stegmaier, Ralf Mikut

published 02 Nov 2017

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PG-Metrics: A chemometric-based approach for classifying bacterial peptidoglycan data sets and uncovering their subjacent chemical variability

Keshav Kumar, Akbar Espaillat, Felipe Cava

published 17 Oct 2017

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Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted images

Nathan M. Muncy, Ariana M. Hedges-Muncy, C. Brock Kirwan

published 12 Oct 2017

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OXSA: An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB

Lucian A. B. Purvis, William T. Clarke, Luca Biasiolli, Ladislav Valkovič, Matthew D. Robson, Christopher T. Rodgers

published 22 Sep 2017

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A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations

Salome Horsch, Dominik Kopczynski, Elias Kuthe, Jörg Ingo Baumbach, Sven Rahmann, Jörg Rahnenführer

published 14 Sep 2017

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RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses

Bajuna Rashid Salehe, Chris Ian Jones, Giuseppe Di Fatta, Liam James McGuffin

published 25 Apr 2017

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Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce

Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier

published 30 Mar 2017

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Solving global shallow water equations on heterogeneous supercomputers

Haohuan Fu, Lin Gan, Chao Yang, Wei Xue, Lanning Wang, Xinliang Wang, Xiaomeng Huang, Guangwen Yang

published 10 Mar 2017

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Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, Yves Lemoine, David Hot, Christophe Audebert, Ségolène Caboche

published 04 Jan 2017

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