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Computational pipelines

Accurately tracking single-cell movement trajectories in microfluidic cell sorting devices

Jenny Jeong, Nicholas J. Frohberg, [ ... ], Peng Qiu

White matter tract-specific quantitative analysis in multiple sclerosis: Comparison of optic radiation reconstruction techniques

Chenyu Wang, Alexander Klistorner, Linda Ly, Michael H. Barnett

Automated segmentation of complex patterns in biological tissues: Lessons from stingray tessellated cartilage

David Knötel, Ronald Seidel, [ ... ], Daniel Baum

A functional pipeline framework for landmark identification on 3D surface extracted from volumetric data

Pan Zheng, Bahari Belaton, Iman Yi Liao, Zainul Ahmad Rajion

Fuzzy-based propagation of prior knowledge to improve large-scale image analysis pipelines

Johannes Stegmaier, Ralf Mikut

PG-Metrics: A chemometric-based approach for classifying bacterial peptidoglycan data sets and uncovering their subjacent chemical variability

Keshav Kumar, Akbar Espaillat, Felipe Cava

Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted images

Nathan M. Muncy, Ariana M. Hedges-Muncy, C. Brock Kirwan

OXSA: An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB

Lucian A. B. Purvis, William T. Clarke, [ ... ], Christopher T. Rodgers

A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations

Salome Horsch, Dominik Kopczynski, [ ... ], Jörg Rahnenführer

RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses

Bajuna Rashid Salehe, Chris Ian Jones, Giuseppe Di Fatta, Liam James McGuffin

Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce

Dries Decap, Joke Reumers, [ ... ], Jan Fostier

Solving global shallow water equations on heterogeneous supercomputers

Haohuan Fu, Lin Gan, [ ... ], Guangwen Yang

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, [ ... ], Ségolène Caboche

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