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Computational pipelines

Accurate Data Processing Improves the Reliability of Affymetrix Gene Expression Profiles from FFPE Samples

Maurizio Callari, Antonio Lembo, [ ... ], Paolo Provero

Addressing the need for interactive, efficient, and reproducible data processing in ecology with the datacleanr R package

Alexander G. Hurley, Richard L. Peters, [ ... ], Ingo Heinrich

Solving global shallow water equations on heterogeneous supercomputers

Haohuan Fu, Lin Gan, [ ... ], Guangwen Yang

Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

Nofe Alganmi, Heba Abusamra

Compressive Big Data Analytics: An ensemble meta-algorithm for high-dimensional multisource datasets

Simeone Marino, Yi Zhao, [ ... ], Ivo D. Dinov

Validation pipeline for machine learning algorithm assessment for multiple vendors

Bernardo C. Bizzo, Shadi Ebrahimian, [ ... ], Subba R. Digumarthy

uafR: An R package that automates mass spectrometry data processing

Chase A. Stratton, Yvonne Thompson, [ ... ], Ebony G. Murrell

Identification of diabetic retinopathy lesions in fundus images by integrating CNN and vision mamba models

Zenglei Liu, Ailian Gao, Hui Sheng, Xueling Wang

LDMP-RENet: Reducing intra-class differences for metal surface defect few-shot semantic segmentation

Jiyan Zhang, Hanze Ding, [ ... ], Yanfang Liu

Nanopore sequencing data analysis using Microsoft Azure cloud computing service

Linh Truong, Felipe Ayora, [ ... ], Dianne De Santis

Automated segmentation of complex patterns in biological tissues: Lessons from stingray tessellated cartilage

David Knötel, Ronald Seidel, [ ... ], Daniel Baum

Efficient In Silico Identification of a Common Insertion in the MAK Gene which Causes Retinitis Pigmentosa

Kinga M. Bujakowska, Joseph White, [ ... ], Jason Comander

A Pipelined Non-Deterministic Finite Automaton-Based String Matching Scheme Using Merged State Transitions in an FPGA

HyunJin Kim, Kang-Il Choi

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