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Computational pipelines

Automated data extraction from historical city directories: The rise and fall of mid-century gas stations in Providence, RI

Samuel Bell, Thomas Marlow, [ ... ], Scott Frickel

FeAture Explorer (FAE): A tool for developing and comparing radiomics models

Yang Song, Jing Zhang, [ ... ], Guang Yang

A rapid and cost-effective pipeline for digitization of museum specimens with 3D photogrammetry

Joshua J. Medina, James M. Maley, [ ... ], John E. McCormack

A high-throughput imaging and quantification pipeline for the EVOS imaging platform

Stefan Donovan Klimaj, Yamhilette Licon Munoz, Katelyn Del Toro, William Curtis Hines

Automatic three-dimensional reconstruction of fascicles in peripheral nerves from histological images

Daniel Tovbis, Anne Agur, Jeremy P. M. Mogk, José Zariffa

Comparison of quality control methods for automated diffusion tensor imaging analysis pipelines

Seyyed M. H. Haddad, Christopher J. M. Scott, [ ... ], Robert Bartha

SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework

Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars

A feature selection strategy for gene expression time series experiments with hidden Markov models

Roberto A. Cárdenas-Ovando, Edith A. Fernández-Figueroa, [ ... ], Claudia Rangel-Escareño

gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Juhana I. Kammonen, Olli-Pekka Smolander, [ ... ], Petri Auvinen

Cardiovascular disease risk prediction using automated machine learning: A prospective study of 423,604 UK Biobank participants

Ahmed M. Alaa, Thomas Bolton, [ ... ], Mihaela van der Schaar

From invisibility to readability: Recovering the ink of Herculaneum

Clifford Seth Parker, Stephen Parsons, [ ... ], William Brent Seales

elPrep 4: A multithreaded framework for sequence analysis

Charlotte Herzeel, Pascal Costanza, [ ... ], Wilfried Verachtert

An improved machine learning pipeline for urinary volatiles disease detection: Diagnosing diabetes

Andrea S. Martinez-Vernon, James A. Covington, [ ... ], Richard S. Savage

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