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Computational pipelines

Sequence-Based Classification Using Discriminatory Motif Feature Selection

Hao Xiong, Daniel Capurso, Śaunak Sen, Mark R. Segal

High-performance simplification of triangular surfaces using a GPU

Mohamed H. Mousa, Mohamed K. Hussein

Validation of Coevolving Residue Algorithms via Pipeline Sensitivity Analysis: ELSC and OMES and ZNMI, Oh My!

Christopher A. Brown, Kevin S. Brown

MetaWorks: A flexible, scalable bioinformatic pipeline for high-throughput multi-marker biodiversity assessments

Teresita M. Porter, Mehrdad Hajibabaei

ExScalibur: A High-Performance Cloud-Enabled Suite for Whole Exome Germline and Somatic Mutation Identification

Riyue Bao, Kyle Hernandez, [ ... ], Jorge Andrade

Sam2bam: High-Performance Framework for NGS Data Preprocessing Tools

Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng

PHOTONAI—A Python API for rapid machine learning model development

Ramona Leenings, Nils Ralf Winter, [ ... ], Tim Hahn

NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

Mohan A. V. S. K. Katta, Aamir W. Khan, [ ... ], Rajeev K. Varshney

Accurately tracking single-cell movement trajectories in microfluidic cell sorting devices

Jenny Jeong, Nicholas J. Frohberg, [ ... ], Peng Qiu

Biological Time Series Analysis Using a Context Free Language: Applicability to Pulsatile Hormone Data

Dennis A. Dean II, Gail K. Adler, David P. Nguyen, Elizabeth B. Klerman

Computational Design of Hypothetical New Peptides Based on a Cyclotide Scaffold as HIV gp120 Inhibitor

Apiwat Sangphukieo, Wanapinun Nawae, [ ... ], Marasri Ruengjitchatchawalya

Automatic three-dimensional reconstruction of fascicles in peripheral nerves from histological images

Daniel Tovbis, Anne Agur, Jeremy P. M. Mogk, José Zariffa

Ffuzz: Towards full system high coverage fuzz testing on binary executables

Bin Zhang, Jiaxi Ye, [ ... ], Chaojing Tang

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