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Computational pipelines

Evaluation of data processing pipelines on real-world electronic health records data for the purpose of measuring patient similarity

Maria Pikoula, Constantinos Kallis, Sephora Madjiheurem, Jennifer K. Quint, Mona Bafadhel, Spiros Denaxas

published 15 Jun 2023

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Extracting relevant predictive variables for COVID-19 severity prognosis: An exhaustive comparison of feature selection techniques

Miren Hayet-Otero, Fernando García-García, Dae-Jin Lee, Joaquín Martínez-Minaya, Pedro Pablo España Yandiola, Isabel Urrutia Landa, Mónica Nieves Ermecheo, José María Quintana, Rosario Menéndez, Antoni Torres, Rafael Zalacain Jorge, Inmaculada Arostegui, with the COVID-19 & Air Pollution Working Group

published 13 Apr 2023

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Inflated expectations: Rare-variant association analysis using public controls

Jung Kim, Danielle M. Karyadi, Stephen W. Hartley, Bin Zhu, Mingyi Wang, Dongjing Wu, Lei Song, Gregory T. Armstrong, Smita Bhatia, Leslie L. Robison, Yutaka Yasui, Brian Carter, Joshua N. Sampson, Neal D. Freedman, Alisa M. Goldstein, Lisa Mirabello, Stephen J. Chanock, Lindsay M. Morton, Sharon A. Savage, Douglas R. Stewart

published 25 Jan 2023

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Nanopore sequencing data analysis using Microsoft Azure cloud computing service

Linh Truong, Felipe Ayora, Lloyd D’Orsogna, Patricia Martinez, Dianne De Santis

published 02 Dec 2022

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NGSpop: A desktop software that supports population studies by identifying sequence variations from next-generation sequencing data

Dong-Jun Lee, Taesoo Kwon, Hye-Jin Lee, Yun-Ho Oh, Jin-Hyun Kim, Tae-Ho Lee

published 17 Nov 2022

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MetaWorks: A flexible, scalable bioinformatic pipeline for high-throughput multi-marker biodiversity assessments

Teresita M. Porter, Mehrdad Hajibabaei

published 29 Sep 2022

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CVR-MRICloud: An online processing tool for CO2-inhalation and resting-state cerebrovascular reactivity (CVR) MRI data

Peiying Liu, Zachary Baker, Yue Li, Yang Li, Jiadi Xu, Denise C. Park, Babu G. Welch, Marco Pinho, Jay J. Pillai, Argye E. Hillis, Susumu Mori, Hanzhang Lu

published 28 Sep 2022

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Study on connectivity of buried pipeline network considering nodes reliability under seismic action

Delong Huang, Zhongling Zong, Aiping Tang

published 22 Aug 2022

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Based on abnormal fluctuations in user-side flow simulation analysis of low- and medium-pressure gas pipeline leakage monitoring

Xiaomin Wang, Zhengshan Luo, Yulei Kong, Qingqing Wang

published 25 Jul 2022

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Addressing the need for interactive, efficient, and reproducible data processing in ecology with the datacleanr R package

Alexander G. Hurley, Richard L. Peters, Christoforos Pappas, David N. Steger, Ingo Heinrich

published 12 May 2022

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SinGAN-Seg: Synthetic training data generation for medical image segmentation

Vajira Thambawita, Pegah Salehi, Sajad Amouei Sheshkal, Steven A. Hicks, Hugo L. Hammer, Sravanthi Parasa, Thomas de Lange, Pål Halvorsen, Michael A. Riegler

published 02 May 2022

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Validation pipeline for machine learning algorithm assessment for multiple vendors

Bernardo C. Bizzo, Shadi Ebrahimian, Mark E. Walters, Mark H. Michalski, Katherine P. Andriole, Keith J. Dreyer, Mannudeep K. Kalra, Tarik Alkasab, Subba R. Digumarthy

published 29 Apr 2022

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Neuromorphic computing for content-based image retrieval

Te-Yuan Liu, Ata Mahjoubfar, Daniel Prusinski, Luis Stevens

published 06 Apr 2022

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