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Computational pipelines

Kuura—An automated workflow for analyzing WES and WGS data

Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey

published 18 Jan 2024

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A hybrid Cycle GAN-based lightweight road perception pipeline for road dataset generation for Urban mobility

Balaji Ganesh Rajagopal, Manish Kumar, Abdulaziz H. Alshehri, Fayez Alanazi, Ahmed farouk Deifalla, Ahmed M. Yosri, Abdelhalim Azam

published 30 Nov 2023

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Implementation and empirical evaluation of a quantum machine learning pipeline for local classification

Enrico Zardini, Enrico Blanzieri, Davide Pastorello

published 13 Nov 2023

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From multimodal features to behavioural inferences: A pipeline to model engagement in human-robot interactions

Soham Joshi, Arpitha Malavalli, Shrisha Rao

published 08 Nov 2023

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Towards accelerating model parallelism in distributed deep learning systems

Hyeonseong Choi, Byung Hyun Lee, Se Young Chun, Jaehwan Lee

published 02 Nov 2023

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Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

Nofe Alganmi, Heba Abusamra

published 03 Aug 2023

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Modular pipeline for reconstruction and localization of implanted intracranial ECoG and sEEG electrodes

Daniel J. Soper, Dustine Reich, Alex Ross, Pariya Salami, Sydney S. Cash, Ishita Basu, Noam Peled, Angelique C. Paulk

published 07 Jul 2023

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Evaluation of data processing pipelines on real-world electronic health records data for the purpose of measuring patient similarity

Maria Pikoula, Constantinos Kallis, Sephora Madjiheurem, Jennifer K. Quint, Mona Bafadhel, Spiros Denaxas

published 15 Jun 2023

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Extracting relevant predictive variables for COVID-19 severity prognosis: An exhaustive comparison of feature selection techniques

Miren Hayet-Otero, Fernando García-García, Dae-Jin Lee, Joaquín Martínez-Minaya, Pedro Pablo España Yandiola, Isabel Urrutia Landa, Mónica Nieves Ermecheo, José María Quintana, Rosario Menéndez, Antoni Torres, Rafael Zalacain Jorge, Inmaculada Arostegui, with the COVID-19 & Air Pollution Working Group

published 13 Apr 2023

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Inflated expectations: Rare-variant association analysis using public controls

Jung Kim, Danielle M. Karyadi, Stephen W. Hartley, Bin Zhu, Mingyi Wang, Dongjing Wu, Lei Song, Gregory T. Armstrong, Smita Bhatia, Leslie L. Robison, Yutaka Yasui, Brian Carter, Joshua N. Sampson, Neal D. Freedman, Alisa M. Goldstein, Lisa Mirabello, Stephen J. Chanock, Lindsay M. Morton, Sharon A. Savage, Douglas R. Stewart

published 25 Jan 2023

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Nanopore sequencing data analysis using Microsoft Azure cloud computing service

Linh Truong, Felipe Ayora, Lloyd D’Orsogna, Patricia Martinez, Dianne De Santis

published 02 Dec 2022

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NGSpop: A desktop software that supports population studies by identifying sequence variations from next-generation sequencing data

Dong-Jun Lee, Taesoo Kwon, Hye-Jin Lee, Yun-Ho Oh, Jin-Hyun Kim, Tae-Ho Lee

published 17 Nov 2022

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MetaWorks: A flexible, scalable bioinformatic pipeline for high-throughput multi-marker biodiversity assessments

Teresita M. Porter, Mehrdad Hajibabaei

published 29 Sep 2022

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