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Computational pipelines

Accelerating electrostatic particle-in-cell simulation: A novel FPGA-based approach for efficient plasma investigations

Abedalmuhdi Almomany, Muhammed Sutcu, Babul Salam K. S. M. Kader Ibrahim

published 03 Jun 2024

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Exploring memory synchronization and performance considerations for FPGA platform using the high-abstracted OpenCL framework: Benchmarks development and analysis

Abedalmuhdi Almomany, Amin Jarrah, Muhammed Sutcu

published 13 May 2024

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Study on design optimization of GFRP tubular column composite structure based on machine learning method

Peiyao Shu, Chengqi Xue, Gengpei Zhang, Tianyi Deng

published 26 Apr 2024

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Bioinformatics pipeline for the systematic mining genomic and proteomic variation linked to rare diseases: The example of monogenic diabetes

Ksenia G. Kuznetsova, Jakub Vašíček, Dafni Skiadopoulou, Janne Molnes, Miriam Udler, Stefan Johansson, Pål Rasmus Njølstad, Alisa Manning, Marc Vaudel

published 18 Apr 2024

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MicroBundleCompute: Automated segmentation, tracking, and analysis of subdomain deformation in cardiac microbundles

Hiba Kobeissi, Javiera Jilberto, M. Çağatay Karakan, Xining Gao, Samuel J. DePalma, Shoshana L. Das, Lani Quach, Jonathan Urquia, Brendon M. Baker, Christopher S. Chen, David Nordsletten, Emma Lejeune

published 26 Mar 2024

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BetaBuddy: An automated end-to-end computer vision pipeline for analysis of calcium fluorescence dynamics in β-cells

Anne M. Alsup, Kelli Fowlds, Michael Cho, Jacob M. Luber

published 15 Mar 2024

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Assessment of differentially private synthetic data for utility and fairness in end-to-end machine learning pipelines for tabular data

Mayana Pereira, Meghana Kshirsagar, Sumit Mukherjee, Rahul Dodhia, Juan Lavista Ferres, Rafael de Sousa

published 05 Feb 2024

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Kuura—An automated workflow for analyzing WES and WGS data

Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey

published 18 Jan 2024

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Implementation and empirical evaluation of a quantum machine learning pipeline for local classification

Enrico Zardini, Enrico Blanzieri, Davide Pastorello

published 13 Nov 2023

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From multimodal features to behavioural inferences: A pipeline to model engagement in human-robot interactions

Soham Joshi, Arpitha Malavalli, Shrisha Rao

published 08 Nov 2023

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Towards accelerating model parallelism in distributed deep learning systems

Hyeonseong Choi, Byung Hyun Lee, Se Young Chun, Jaehwan Lee

published 02 Nov 2023

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Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

Nofe Alganmi, Heba Abusamra

published 03 Aug 2023

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Modular pipeline for reconstruction and localization of implanted intracranial ECoG and sEEG electrodes

Daniel J. Soper, Dustine Reich, Alex Ross, Pariya Salami, Sydney S. Cash, Ishita Basu, Noam Peled, Angelique C. Paulk

published 07 Jul 2023

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