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Computational pipelines

Assessing the Consequences of Denoising Marker-Based Metagenomic Data

John M. Gaspar, W. Kelley Thomas

GOMoDo: A GPCRs Online Modeling and Docking Webserver

Massimo Sandal, Tran Phuoc Duy, [ ... ], Alejandro Giorgetti

Optimized Brain Extraction for Pathological Brains (optiBET)

Evan S. Lutkenhoff, Matthew Rosenberg, [ ... ], Martin M. Monti

Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks

Johannes Stegmaier, Jens C. Otte, [ ... ], Ralf Mikut

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

Gustavo Arango-Argoty, Gargi Singh, [ ... ], Liqing Zhang

Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, [ ... ], Hong-Wei Zhou

Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks

Anna Kreshuk, Ullrich Koethe, [ ... ], Fred A. Hamprecht

Consensus between Pipelines in Structural Brain Networks

Christopher S. Parker, Fani Deligianni, [ ... ], Jonathan D. Clayden

Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects

Shantanu Singh, Xiaoyun Wu, [ ... ], Anne E. Carpenter

Simultaneous Analysis and Quality Assurance for Diffusion Tensor Imaging

Carolyn B. Lauzon, Andrew J. Asman, [ ... ], Bennett A. Landman

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling

Charlotte Herzeel, Pascal Costanza, [ ... ], Joke Reumers

Comparison of quality control methods for automated diffusion tensor imaging analysis pipelines

Seyyed M. H. Haddad, Christopher J. M. Scott, [ ... ], Robert Bartha

Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study

Stefano Di Carlo, Elena Rossi, [ ... ], Federica Meloni

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