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Computational pipelines

A rapid and cost-effective pipeline for digitization of museum specimens with 3D photogrammetry

Joshua J. Medina, James M. Maley, [ ... ], John E. McCormack

OXSA: An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB

Lucian A. B. Purvis, William T. Clarke, [ ... ], Christopher T. Rodgers

An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

Eloi Mercier, Arnaud Droit, [ ... ], Raphael Gottardo

Repertoire of microRNAs in Epithelial Ovarian Cancer as Determined by Next Generation Sequencing of Small RNA cDNA Libraries

Stacia K. Wyman, Rachael K. Parkin, [ ... ], Muneesh Tewari

SinGAN-Seg: Synthetic training data generation for medical image segmentation

Vajira Thambawita, Pegah Salehi, [ ... ], Michael A. Riegler

IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, [ ... ], Nicholas Chia

Real-Time Analysis and Visualization for Single-Molecule Based Super-Resolution Microscopy

Adel Kechkar, Deepak Nair, [ ... ], Jean-Baptiste Sibarita

JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing

David K. Brown, David L. Penkler, Thommas M. Musyoka, Özlem Tastan Bishop

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

Guorong Xu, Michael J. Strong, [ ... ], Christopher M. Taylor

FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis

Alex D. Herbert, Antony M. Carr, Eva Hoffmann

Novel R Pipeline for Analyzing Biolog Phenotypic Microarray Data

Minna Vehkala, Mikhail Shubin, [ ... ], Jukka Corander

The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus Found in the Amblyomma americanum Tick

Andrea Swei, Brandy J. Russell, [ ... ], Charles Y. Chiu

Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline

Ivo Dinov, Kamen Lozev, [ ... ], Arthur Toga

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