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Computational pipelines

Ocotillo optimization-driven deep learning for bone marrow cytology classification

Doaa Sami Khafaga, El-Sayed M. El-kenawy, Faris H. Rizk, Marwa M. Eid, Ehsaneh Khodadadi, Nima Khodadadi

published 29 Aug 2025

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VNC-Dist: A machine learning-based semi-automated pipeline for quantification of neuronal position in the C. elegans ventral nerve cord

Saber Saharkhiz, Wesley Chan, Chloe B. Kirezi, Mearhyn Petite, Tony Roenspies, Theodore J. Perkins, Antonio Colavita

published 28 Aug 2025

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Modular and cloud-based bioinformatics pipelines for high-confidence biomarker detection in cancer immunotherapy clinical trials

Cu Nguyen, Trinh Nguyen, Gloria Trivitt, Brian Capaldo, Chunhua Yan, Qingrong Chen, Nicholas Renzette, Umit Topaloglu, Daoud Meerzaman

published 26 Aug 2025

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A lightweight cross-scale feature fusion model based on YOLOv8 for defect detection in sewer pipeline

Ruibo Sha, Zhifeng Zhang, Xiao Cui, Qingzheng Mu

published 21 Aug 2025

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Impact of deep learning and post-processing algorithms performances on biodiversity metrics assessed on videos

Valentine Fleuré, Kévin Planolles, Thomas Claverie, Baptiste Mulot, Sébastien Villéger

published 11 Aug 2025

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Scalable quality control on processing of large diffusion-weighted and structural magnetic resonance imaging datasets

Michael E. Kim, Chenyu Gao, Nancy R. Newlin, Gaurav Rudravaram, Aravind R. Krishnan, Karthik Ramadass, Praitayini Kanakaraj, Kurt G. Schilling, Blake E. Dewey, David A. Bennett, Sid O’Bryant, Robert C. Barber, Derek Archer, Timothy J. Hohman, Shunxing Bao, Zhiyuan Li, Bennett A. Landman, Nazirah Mohd Khairi, The Alzheimer’s Disease Neuroimaging Initiative , The HABS-HD Study Team

published 01 Aug 2025

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Gain efficiency with streamlined and automated data processing: Examples from high-throughput monoclonal antibody production

Malwina Kotowicz, Magdalena Shumanska, Sven Fengler, Birgit Kurkowsky, Anja Meyer-Berhorn, Elisa Moretti, Josephine Blersch, Gisela Schmidt, Jakob Kreye, Scott van Hoof, Elisa Sánchez-Sendín, S. Momsen Reincke, Lars Krüger, Harald Prüß, Philip Denner, Eugenio Fava, Dominik Stappert

published 01 Jul 2025

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A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens

Marco Podda, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Alina Sîrbu, Corrado Priami, Alessandro Brozzi

published 05 Jun 2025

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Real estate valuation with multi-source image fusion and enhanced machine learning pipeline

Lin Deng

published 19 May 2025

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Area-time efficient pipelined number theoretic transform for CRYSTALS-Kyber

Ayesha Waris, Arshad Aziz, Bilal Muhammad Khan

published 14 May 2025

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Replacing non-biomedical concepts improves embedding of biomedical concepts

Enock Niyonkuru, Mauricio Soto Gomez, Elena Casarighi, Stephan Antogiovanni, Hannah Blau, Justin T. Reese, Giorgio Valentini, Peter N. Robinson

published 05 May 2025

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Exploring similarity patterns in a large scientific corpus

Daniel Witschard, Ilir Jusufi, Kostiantyn Kucher, Andreas Kerren

published 21 Apr 2025

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LDMP-RENet: Reducing intra-class differences for metal surface defect few-shot semantic segmentation

Jiyan Zhang, Hanze Ding, Zhangkai Wu, Ming Peng, Yanfang Liu

published 17 Mar 2025

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