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Computational pipelines

PSimScan: Algorithm and Utility for Fast Protein Similarity Search

Anna Kaznadzey, Natalia Alexandrova, Vladimir Novichkov, Denis Kaznadzey

Reliable Identification of Deep Sulcal Pits: The Effects of Scan Session, Scanner, and Surface Extraction Tool

Kiho Im, Jong-Min Lee, [ ... ], P. Ellen Grant

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, [ ... ], Peer Bork

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling

Implications of Pyrosequencing Error Correction for Biological Data Interpretation

Matthew G. Bakker, Zheng J. Tu, James M. Bradeen, Linda L. Kinkel

Inferring Phenotypic Properties from Single-Cell Characteristics

Peng Qiu

Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, [ ... ], Hong-Wei Zhou

Sequence-Based Classification Using Discriminatory Motif Feature Selection

Hao Xiong, Daniel Capurso, Śaunak Sen, Mark R. Segal

Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing

Samuel V. Angiuoli, James R. White, [ ... ], W. Florian Fricke

An Integrated Pipeline for the Genome-Wide Analysis of Transcription Factor Binding Sites from ChIP-Seq

Eloi Mercier, Arnaud Droit, [ ... ], Raphael Gottardo

Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline

Ivo Dinov, Kamen Lozev, [ ... ], Arthur Toga

Validation of Coevolving Residue Algorithms via Pipeline Sensitivity Analysis: ELSC and OMES and ZNMI, Oh My!

Christopher A. Brown, Kevin S. Brown

Repertoire of microRNAs in Epithelial Ovarian Cancer as Determined by Next Generation Sequencing of Small RNA cDNA Libraries

Stacia K. Wyman, Rachael K. Parkin, [ ... ], Muneesh Tewari

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