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Computational pipelines

Ultra Deep Sequencing of Listeria monocytogenes sRNA Transcriptome Revealed New Antisense RNAs

Sebastian Behrens, Stefanie Widder, [ ... ], Torsten Hain

Accurate Data Processing Improves the Reliability of Affymetrix Gene Expression Profiles from FFPE Samples

Maurizio Callari, Antonio Lembo, [ ... ], Paolo Provero

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, [ ... ], Joel T. Dudley

GOMoDo: A GPCRs Online Modeling and Docking Webserver

Massimo Sandal, Tran Phuoc Duy, [ ... ], Alejandro Giorgetti

i3Drefine Software for Protein 3D Structure Refinement and Its Assessment in CASP10

Debswapna Bhattacharya, Jianlin Cheng

SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner

Ruibang Luo, Thomas Wong, [ ... ], Tak-Wah Lam

Real-Time Analysis and Visualization for Single-Molecule Based Super-Resolution Microscopy

Adel Kechkar, Deepak Nair, [ ... ], Jean-Baptiste Sibarita

Simultaneous Analysis and Quality Assurance for Diffusion Tensor Imaging

Carolyn B. Lauzon, Andrew J. Asman, [ ... ], Bennett A. Landman

The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus Found in the Amblyomma americanum Tick

Andrea Swei, Brandy J. Russell, [ ... ], Charles Y. Chiu

Assessing the Consequences of Denoising Marker-Based Metagenomic Data

John M. Gaspar, W. Kelley Thomas

Visual to Parametric Interaction (V2PI)

Scotland C. Leman, Leanna House, [ ... ], Chris North

PSimScan: Algorithm and Utility for Fast Protein Similarity Search

Anna Kaznadzey, Natalia Alexandrova, Vladimir Novichkov, Denis Kaznadzey

Reliable Identification of Deep Sulcal Pits: The Effects of Scan Session, Scanner, and Surface Extraction Tool

Kiho Im, Jong-Min Lee, [ ... ], P. Ellen Grant

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