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Computational pipelines

SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner

Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu, Xiaoqian Zhu, Edward Wu, Lap-Kei Lee, Haoxiang Lin, Wenjuan Zhu, David W. Cheung, Hing-Fung Ting, Siu-Ming Yiu, Shaoliang Peng, Chang Yu, Yingrui Li, Ruiqiang Li, Tak-Wah Lam

published 31 May 2013

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Real-Time Analysis and Visualization for Single-Molecule Based Super-Resolution Microscopy

Adel Kechkar, Deepak Nair, Mike Heilemann, Daniel Choquet, Jean-Baptiste Sibarita

published 30 Apr 2013

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Simultaneous Analysis and Quality Assurance for Diffusion Tensor Imaging

Carolyn B. Lauzon, Andrew J. Asman, Michael L. Esparza, Scott S. Burns, Qiuyun Fan, Yurui Gao, Adam W. Anderson, Nicole Davis, Laurie E. Cutting, Bennett A. Landman

published 30 Apr 2013

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The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus Found in the Amblyomma americanum Tick

Andrea Swei, Brandy J. Russell, Samia N. Naccache, Beniwende Kabre, Narayanan Veeraraghavan, Mark A. Pilgard, Barbara J. B. Johnson, Charles Y. Chiu

published 29 Apr 2013

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Assessing the Consequences of Denoising Marker-Based Metagenomic Data

John M. Gaspar, W. Kelley Thomas

published 25 Mar 2013

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Visual to Parametric Interaction (V2PI)

Scotland C. Leman, Leanna House, Dipayan Maiti, Alex Endert, Chris North

published 20 Mar 2013

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PSimScan: Algorithm and Utility for Fast Protein Similarity Search

Anna Kaznadzey, Natalia Alexandrova, Vladimir Novichkov, Denis Kaznadzey

published 07 Mar 2013

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Reliable Identification of Deep Sulcal Pits: The Effects of Scan Session, Scanner, and Surface Extraction Tool

Kiho Im, Jong-Min Lee, Seun Jeon, Jong-Heon Kim, Sang Won Seo, Duk L. Na, P. Ellen Grant

published 07 Jan 2013

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MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, Junhua Li, Weineng Chen, Hua Chen, Daniel R. Mende, Manimozhiyan Arumugam, Qi Pan, Binghang Liu, Junjie Qin, Jun Wang, Peer Bork

published 17 Oct 2012

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An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling

published 13 Sep 2012

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Implications of Pyrosequencing Error Correction for Biological Data Interpretation

Matthew G. Bakker, Zheng J. Tu, James M. Bradeen, Linda L. Kinkel

published 30 Aug 2012

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Inferring Phenotypic Properties from Single-Cell Characteristics

Peng Qiu

published 25 May 2012

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Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, Hua-Fang Sheng, Yu Wang, Yan He, Fei Zou, Hong-Wei Zhou

published 11 Jan 2012

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