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Computational pipelines

Biological Time Series Analysis Using a Context Free Language: Applicability to Pulsatile Hormone Data

Dennis A. Dean II, Gail K. Adler, David P. Nguyen, Elizabeth B. Klerman

optPBN: An Optimisation Toolbox for Probabilistic Boolean Networks

Panuwat Trairatphisan, Andrzej Mizera, [ ... ], Thomas Sauter

Effect of Intrinsic and Extrinsic Factors on Global and Regional Cortical Thickness

Koushik A. Govindarajan, Leorah Freeman, [ ... ], Ponnada A. Narayana

Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment

Jason Li, Maria A. Doyle, [ ... ], Richard W. Tothill

Automated Quantification Reveals Hyperglycemia Inhibits Endothelial Angiogenic Function

Anthony R. Prisco, John D. Bukowy, [ ... ], Andrew S. Greene

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz, Terry M. Casstevens, [ ... ], Edward S. Buckler

Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks

Johannes Stegmaier, Jens C. Otte, [ ... ], Ralf Mikut

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

Guorong Xu, Michael J. Strong, [ ... ], Christopher M. Taylor

A Semi-Automated Pipeline for the Segmentation of Rhesus Macaque Hippocampus: Validation across a Wide Age Range

Michael R. Hunsaker, David G. Amaral

Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks

Anna Kreshuk, Ullrich Koethe, [ ... ], Fred A. Hamprecht

Ultra Deep Sequencing of Listeria monocytogenes sRNA Transcriptome Revealed New Antisense RNAs

Sebastian Behrens, Stefanie Widder, [ ... ], Torsten Hain

Accurate Data Processing Improves the Reliability of Affymetrix Gene Expression Profiles from FFPE Samples

Maurizio Callari, Antonio Lembo, [ ... ], Paolo Provero

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, [ ... ], Joel T. Dudley

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