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Computational pipelines

A Benchmark Data Set to Evaluate the Illumination Robustness of Image Processing Algorithms for Object Segmentation and Classification

Arif ul Maula Khan, Ralf Mikut, Markus Reischl

published 20 Jul 2015

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elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling

Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Joke Reumers

published 16 Jul 2015

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An Automated, Adaptive Framework for Optimizing Preprocessing Pipelines in Task-Based Functional MRI

Nathan W. Churchill, Robyn Spring, Babak Afshin-Pour, Fan Dong, Stephen C. Strother

published 10 Jul 2015

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Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes

Suyash S. Shringarpure, Andrew Carroll, Francisco M. De La Vega, Carlos D. Bustamante

published 25 Jun 2015

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Comparison of the Association of Sac Growth and Coil Compaction with Recurrence in Coil Embolized Cerebral Aneurysms

Anna L. Hoppe, Madhavan L. Raghavan, David M. Hasan

published 20 Apr 2015

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Novel R Pipeline for Analyzing Biolog Phenotypic Microarray Data

Minna Vehkala, Mikhail Shubin, Thomas R Connor, Nicholas R Thomson, Jukka Corander

published 18 Mar 2015

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Head-to-Head Comparison of Two Popular Cortical Thickness Extraction Algorithms: A Cross-Sectional and Longitudinal Study

Alberto Redolfi, David Manset, Frederik Barkhof, Lars-Olof Wahlund, Tristan Glatard, Jean-François Mangin, Giovanni B. Frisoni, neuGRID Consortium, for the Alzheimer’s Disease Neuroimaging Initiative

published 17 Mar 2015

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A Toolkit for ARB to Integrate Custom Databases and Externally Built Phylogenies

Steven D. Essinger, Erin Reichenberger, Calvin Morrison, Christopher B. Blackwood, Gail L. Rosen

published 21 Jan 2015

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Elastography Using Multi-Stream GPU: An Application to Online Tracked Ultrasound Elastography, In-Vivo and the da Vinci Surgical System

Nishikant P. Deshmukh, Hyun Jae Kang, Seth D. Billings, Russell H. Taylor, Gregory D. Hager, Emad M. Boctor

published 26 Dec 2014

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Allele Workbench: Transcriptome Pipeline and Interactive Graphics for Allele-Specific Expression

Carol A. Soderlund, William M. Nelson, Stephen A. Goff

published 26 Dec 2014

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Optimized Brain Extraction for Pathological Brains (optiBET)

Evan S. Lutkenhoff, Matthew Rosenberg, Jeffrey Chiang, Kunyu Zhang, John D. Pickard, Adrian M. Owen, Martin M. Monti

published 16 Dec 2014

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IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, Xianfeng Chen, Jaysheel Bhavsar, Ashutosh Mangalam, Bryan White, Heidi Nelson, Jean-Pierre Kocher, Nicholas Chia

published 15 Dec 2014

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FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis

Alex D. Herbert, Antony M. Carr, Eva Hoffmann

published 05 Dec 2014

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