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Computational pipelines

Effect of Intrinsic and Extrinsic Factors on Global and Regional Cortical Thickness

Koushik A. Govindarajan, Leorah Freeman, Chunyan Cai, Mohammad H. Rahbar, Ponnada A. Narayana

published 02 May 2014

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Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment

Jason Li, Maria A. Doyle, Isaam Saeed, Stephen Q. Wong, Victoria Mar, David L. Goode, Franco Caramia, Ken Doig, Georgina L. Ryland, Ella R. Thompson, Sally M. Hunter, Saman K. Halgamuge, Jason Ellul, Alexander Dobrovic, Ian G. Campbell, Anthony T. Papenfuss, Grant A. McArthur, Richard W. Tothill

published 21 Apr 2014

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Automated Quantification Reveals Hyperglycemia Inhibits Endothelial Angiogenic Function

Anthony R. Prisco, John D. Bukowy, Brian R. Hoffmann, Jamie R. Karcher, Eric C. Exner, Andrew S. Greene

published 09 Apr 2014

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TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz, Terry M. Casstevens, Fei Lu, James Harriman, Robert J. Elshire, Qi Sun, Edward S. Buckler

published 28 Feb 2014

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Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks

Johannes Stegmaier, Jens C. Otte, Andrei Kobitski, Andreas Bartschat, Ariel Garcia, G. Ulrich Nienhaus, Uwe Strähle, Ralf Mikut

published 27 Feb 2014

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RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

Guorong Xu, Michael J. Strong, Michelle R. Lacey, Carl Baribault, Erik K. Flemington, Christopher M. Taylor

published 25 Feb 2014

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A Semi-Automated Pipeline for the Segmentation of Rhesus Macaque Hippocampus: Validation across a Wide Age Range

Michael R. Hunsaker, David G. Amaral

published 24 Feb 2014

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Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks

Anna Kreshuk, Ullrich Koethe, Elizabeth Pax, Davi D. Bock, Fred A. Hamprecht

published 06 Feb 2014

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Ultra Deep Sequencing of Listeria monocytogenes sRNA Transcriptome Revealed New Antisense RNAs

Sebastian Behrens, Stefanie Widder, Gopala Krishna Mannala, Xiaoxing Qing, Ramakanth Madhugiri, Nathalie Kefer, Mobarak Abu Mraheil, Thomas Rattei, Torsten Hain

published 03 Feb 2014

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Accurate Data Processing Improves the Reliability of Affymetrix Gene Expression Profiles from FFPE Samples

Maurizio Callari, Antonio Lembo, Giampaolo Bianchini, Valeria Musella, Vera Cappelletti, Luca Gianni, Maria Grazia Daidone, Paolo Provero

published 29 Jan 2014

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STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, Alicia R. Martin, Michael Snyder, Nicholas P. Tatonetti, Joel T. Dudley

published 15 Jan 2014

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GOMoDo: A GPCRs Online Modeling and Docking Webserver

Massimo Sandal, Tran Phuoc Duy, Matteo Cona, Hoang Zung, Paolo Carloni, Francesco Musiani, Alejandro Giorgetti

published 06 Sep 2013

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i3Drefine Software for Protein 3D Structure Refinement and Its Assessment in CASP10

Debswapna Bhattacharya, Jianlin Cheng

published 19 Jul 2013

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