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Computational pipelines

IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, [ ... ], Nicholas Chia

FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis

Alex D. Herbert, Antony M. Carr, Eva Hoffmann

Extraction of Temporal Networks from Term Co-Occurrences in Online Textual Sources

Marko Popović, Hrvoje Štefančić, [ ... ], Vinko Zlatić

Consensus between Pipelines in Structural Brain Networks

Christopher S. Parker, Fani Deligianni, [ ... ], Jonathan D. Clayden

RNA-Seq Gene Profiling - A Systematic Empirical Comparison

Nuno A. Fonseca, John Marioni, Alvis Brazma

Biological Time Series Analysis Using a Context Free Language: Applicability to Pulsatile Hormone Data

Dennis A. Dean II, Gail K. Adler, David P. Nguyen, Elizabeth B. Klerman

optPBN: An Optimisation Toolbox for Probabilistic Boolean Networks

Panuwat Trairatphisan, Andrzej Mizera, [ ... ], Thomas Sauter

Effect of Intrinsic and Extrinsic Factors on Global and Regional Cortical Thickness

Koushik A. Govindarajan, Leorah Freeman, [ ... ], Ponnada A. Narayana

Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment

Jason Li, Maria A. Doyle, [ ... ], Richard W. Tothill

Automated Quantification Reveals Hyperglycemia Inhibits Endothelial Angiogenic Function

Anthony R. Prisco, John D. Bukowy, [ ... ], Andrew S. Greene

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz, Terry M. Casstevens, [ ... ], Edward S. Buckler

Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks

Johannes Stegmaier, Jens C. Otte, [ ... ], Ralf Mikut

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

Guorong Xu, Michael J. Strong, [ ... ], Christopher M. Taylor

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