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Computational pipelines

Efficient In Silico Identification of a Common Insertion in the MAK Gene which Causes Retinitis Pigmentosa

Kinga M. Bujakowska, Joseph White, Emily Place, Mark Consugar, Jason Comander

published 11 Nov 2015

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Computational Design of Hypothetical New Peptides Based on a Cyclotide Scaffold as HIV gp120 Inhibitor

Apiwat Sangphukieo, Wanapinun Nawae, Teeraphan Laomettachit, Umaporn Supasitthimethee, Marasri Ruengjitchatchawalya

published 30 Oct 2015

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A Novel Byte-Substitution Architecture for the AES Cryptosystem

Fakir Sharif Hossain, Md. Liakot Ali

published 22 Oct 2015

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NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

Mohan A. V. S. K. Katta, Aamir W. Khan, Dadakhalandar Doddamani, Mahendar Thudi, Rajeev K. Varshney

published 13 Oct 2015

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JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing

David K. Brown, David L. Penkler, Thommas M. Musyoka, Özlem Tastan Bishop

published 17 Aug 2015

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ExScalibur: A High-Performance Cloud-Enabled Suite for Whole Exome Germline and Somatic Mutation Identification

Riyue Bao, Kyle Hernandez, Lei Huang, Wenjun Kang, Elizabeth Bartom, Kenan Onel, Samuel Volchenboum, Jorge Andrade

published 13 Aug 2015

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Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects

Shantanu Singh, Xiaoyun Wu, Vebjorn Ljosa, Mark-Anthony Bray, Federica Piccioni, David E. Root, John G. Doench, Jesse S. Boehm, Anne E. Carpenter

published 21 Jul 2015

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A Benchmark Data Set to Evaluate the Illumination Robustness of Image Processing Algorithms for Object Segmentation and Classification

Arif ul Maula Khan, Ralf Mikut, Markus Reischl

published 20 Jul 2015

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elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling

Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Joke Reumers

published 16 Jul 2015

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An Automated, Adaptive Framework for Optimizing Preprocessing Pipelines in Task-Based Functional MRI

Nathan W. Churchill, Robyn Spring, Babak Afshin-Pour, Fan Dong, Stephen C. Strother

published 10 Jul 2015

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Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes

Suyash S. Shringarpure, Andrew Carroll, Francisco M. De La Vega, Carlos D. Bustamante

published 25 Jun 2015

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Comparison of the Association of Sac Growth and Coil Compaction with Recurrence in Coil Embolized Cerebral Aneurysms

Anna L. Hoppe, Madhavan L. Raghavan, David M. Hasan

published 20 Apr 2015

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Novel R Pipeline for Analyzing Biolog Phenotypic Microarray Data

Minna Vehkala, Mikhail Shubin, Thomas R Connor, Nicholas R Thomson, Jukka Corander

published 18 Mar 2015

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