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Computational pipelines

Novel R Pipeline for Analyzing Biolog Phenotypic Microarray Data

Minna Vehkala, Mikhail Shubin, Thomas R Connor, Nicholas R Thomson, Jukka Corander

published 18 Mar 2015

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Head-to-Head Comparison of Two Popular Cortical Thickness Extraction Algorithms: A Cross-Sectional and Longitudinal Study

Alberto Redolfi, David Manset, Frederik Barkhof, Lars-Olof Wahlund, Tristan Glatard, Jean-François Mangin, Giovanni B. Frisoni, neuGRID Consortium, for the Alzheimer’s Disease Neuroimaging Initiative

published 17 Mar 2015

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A Toolkit for ARB to Integrate Custom Databases and Externally Built Phylogenies

Steven D. Essinger, Erin Reichenberger, Calvin Morrison, Christopher B. Blackwood, Gail L. Rosen

published 21 Jan 2015

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Elastography Using Multi-Stream GPU: An Application to Online Tracked Ultrasound Elastography, In-Vivo and the da Vinci Surgical System

Nishikant P. Deshmukh, Hyun Jae Kang, Seth D. Billings, Russell H. Taylor, Gregory D. Hager, Emad M. Boctor

published 26 Dec 2014

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Allele Workbench: Transcriptome Pipeline and Interactive Graphics for Allele-Specific Expression

Carol A. Soderlund, William M. Nelson, Stephen A. Goff

published 26 Dec 2014

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Optimized Brain Extraction for Pathological Brains (optiBET)

Evan S. Lutkenhoff, Matthew Rosenberg, Jeffrey Chiang, Kunyu Zhang, John D. Pickard, Adrian M. Owen, Martin M. Monti

published 16 Dec 2014

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IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, Xianfeng Chen, Jaysheel Bhavsar, Ashutosh Mangalam, Bryan White, Heidi Nelson, Jean-Pierre Kocher, Nicholas Chia

published 15 Dec 2014

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FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis

Alex D. Herbert, Antony M. Carr, Eva Hoffmann

published 05 Dec 2014

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Extraction of Temporal Networks from Term Co-Occurrences in Online Textual Sources

Marko Popović, Hrvoje Štefančić, Borut Sluban, Petra Kralj Novak, Miha Grčar, Igor Mozetič, Michelangelo Puliga, Vinko Zlatić

published 03 Dec 2014

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Consensus between Pipelines in Structural Brain Networks

Christopher S. Parker, Fani Deligianni, M. Jorge Cardoso, Pankaj Daga, Marc Modat, Michael Dayan, Chris A. Clark, Sebastien Ourselin, Jonathan D. Clayden

published 30 Oct 2014

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RNA-Seq Gene Profiling - A Systematic Empirical Comparison

Nuno A. Fonseca, John Marioni, Alvis Brazma

published 30 Sep 2014

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Biological Time Series Analysis Using a Context Free Language: Applicability to Pulsatile Hormone Data

Dennis A. Dean II, Gail K. Adler, David P. Nguyen, Elizabeth B. Klerman

published 03 Sep 2014

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optPBN: An Optimisation Toolbox for Probabilistic Boolean Networks

Panuwat Trairatphisan, Andrzej Mizera, Jun Pang, Alexandru Adrian Tantar, Thomas Sauter

published 01 Jul 2014

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