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Computational pipelines

ExScalibur: A High-Performance Cloud-Enabled Suite for Whole Exome Germline and Somatic Mutation Identification

Riyue Bao, Kyle Hernandez, [ ... ], Jorge Andrade

Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects

Shantanu Singh, Xiaoyun Wu, [ ... ], Anne E. Carpenter

A Benchmark Data Set to Evaluate the Illumination Robustness of Image Processing Algorithms for Object Segmentation and Classification

Arif ul Maula Khan, Ralf Mikut, Markus Reischl

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling

Charlotte Herzeel, Pascal Costanza, [ ... ], Joke Reumers

An Automated, Adaptive Framework for Optimizing Preprocessing Pipelines in Task-Based Functional MRI

Nathan W. Churchill, Robyn Spring, [ ... ], Stephen C. Strother

Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes

Suyash S. Shringarpure, Andrew Carroll, Francisco M. De La Vega, Carlos D. Bustamante

Comparison of the Association of Sac Growth and Coil Compaction with Recurrence in Coil Embolized Cerebral Aneurysms

Anna L. Hoppe, Madhavan L. Raghavan, David M. Hasan

Novel R Pipeline for Analyzing Biolog Phenotypic Microarray Data

Minna Vehkala, Mikhail Shubin, [ ... ], Jukka Corander

Head-to-Head Comparison of Two Popular Cortical Thickness Extraction Algorithms: A Cross-Sectional and Longitudinal Study

Alberto Redolfi, David Manset, [ ... ], neuGRID Consortium, for the Alzheimer’s Disease Neuroimaging Initiative

A Toolkit for ARB to Integrate Custom Databases and Externally Built Phylogenies

Steven D. Essinger, Erin Reichenberger, [ ... ], Gail L. Rosen

Elastography Using Multi-Stream GPU: An Application to Online Tracked Ultrasound Elastography, In-Vivo and the da Vinci Surgical System

Nishikant P. Deshmukh, Hyun Jae Kang, [ ... ], Emad M. Boctor

Allele Workbench: Transcriptome Pipeline and Interactive Graphics for Allele-Specific Expression

Carol A. Soderlund, William M. Nelson, Stephen A. Goff

Optimized Brain Extraction for Pathological Brains (optiBET)

Evan S. Lutkenhoff, Matthew Rosenberg, [ ... ], Martin M. Monti

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