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Computational pipelines

Novel R Pipeline for Analyzing Biolog Phenotypic Microarray Data

Minna Vehkala, Mikhail Shubin, [ ... ], Jukka Corander

Head-to-Head Comparison of Two Popular Cortical Thickness Extraction Algorithms: A Cross-Sectional and Longitudinal Study

Alberto Redolfi, David Manset, [ ... ], neuGRID Consortium, for the Alzheimer’s Disease Neuroimaging Initiative

A Toolkit for ARB to Integrate Custom Databases and Externally Built Phylogenies

Steven D. Essinger, Erin Reichenberger, [ ... ], Gail L. Rosen

Elastography Using Multi-Stream GPU: An Application to Online Tracked Ultrasound Elastography, In-Vivo and the da Vinci Surgical System

Nishikant P. Deshmukh, Hyun Jae Kang, [ ... ], Emad M. Boctor

Allele Workbench: Transcriptome Pipeline and Interactive Graphics for Allele-Specific Expression

Carol A. Soderlund, William M. Nelson, Stephen A. Goff

Optimized Brain Extraction for Pathological Brains (optiBET)

Evan S. Lutkenhoff, Matthew Rosenberg, [ ... ], Martin M. Monti

IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, [ ... ], Nicholas Chia

FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis

Alex D. Herbert, Antony M. Carr, Eva Hoffmann

Extraction of Temporal Networks from Term Co-Occurrences in Online Textual Sources

Marko Popović, Hrvoje Štefančić, [ ... ], Vinko Zlatić

Consensus between Pipelines in Structural Brain Networks

Christopher S. Parker, Fani Deligianni, [ ... ], Jonathan D. Clayden

RNA-Seq Gene Profiling - A Systematic Empirical Comparison

Nuno A. Fonseca, John Marioni, Alvis Brazma

Biological Time Series Analysis Using a Context Free Language: Applicability to Pulsatile Hormone Data

Dennis A. Dean II, Gail K. Adler, David P. Nguyen, Elizabeth B. Klerman

optPBN: An Optimisation Toolbox for Probabilistic Boolean Networks

Panuwat Trairatphisan, Andrzej Mizera, [ ... ], Thomas Sauter

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