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Computational pipelines

A Scalable Data Access Layer to Manage Structured Heterogeneous Biomedical Data

Giovanni Delussu, Luca Lianas, Francesca Frexia, Gianluigi Zanetti

published 09 Dec 2016

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Sam2bam: High-Performance Framework for NGS Data Preprocessing Tools

Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng

published 18 Nov 2016

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A New Feedback-Based Method for Parameter Adaptation in Image Processing Routines

Arif ul Maula Khan, Ralf Mikut, Markus Reischl

published 20 Oct 2016

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A Pipelined Non-Deterministic Finite Automaton-Based String Matching Scheme Using Merged State Transitions in an FPGA

HyunJin Kim, Kang-Il Choi

published 03 Oct 2016

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MetaStorm: A Public Resource for Customizable Metagenomics Annotation

Gustavo Arango-Argoty, Gargi Singh, Lenwood S. Heath, Amy Pruden, Weidong Xiao, Liqing Zhang

published 15 Sep 2016

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Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study

Stefano Di Carlo, Elena Rossi, Gianfranco Politano, Simona Inghilleri, Patrizia Morbini, Fiorella Calabrese, Alfredo Benso, Alessandro Savino, Emanuela Cova, Davide Zampieri, Federica Meloni

published 26 Aug 2016

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Preconditioning 2D Integer Data for Fast Convex Hull Computations

José Oswaldo Cadenas, Graham M. Megson, Cris L. Luengo Hendriks

published 03 Mar 2016

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Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA

Kumar Parijat Tripathi, Daniela Evangelista, Antonio Zuccaro, Mario Rosario Guarracino

published 18 Nov 2015

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Efficient In Silico Identification of a Common Insertion in the MAK Gene which Causes Retinitis Pigmentosa

Kinga M. Bujakowska, Joseph White, Emily Place, Mark Consugar, Jason Comander

published 11 Nov 2015

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Computational Design of Hypothetical New Peptides Based on a Cyclotide Scaffold as HIV gp120 Inhibitor

Apiwat Sangphukieo, Wanapinun Nawae, Teeraphan Laomettachit, Umaporn Supasitthimethee, Marasri Ruengjitchatchawalya

published 30 Oct 2015

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A Novel Byte-Substitution Architecture for the AES Cryptosystem

Fakir Sharif Hossain, Md. Liakot Ali

published 22 Oct 2015

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NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

Mohan A. V. S. K. Katta, Aamir W. Khan, Dadakhalandar Doddamani, Mahendar Thudi, Rajeev K. Varshney

published 13 Oct 2015

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JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing

David K. Brown, David L. Penkler, Thommas M. Musyoka, Özlem Tastan Bishop

published 17 Aug 2015

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