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Computational pipelines

A Scalable Data Access Layer to Manage Structured Heterogeneous Biomedical Data

Giovanni Delussu, Luca Lianas, Francesca Frexia, Gianluigi Zanetti

Sam2bam: High-Performance Framework for NGS Data Preprocessing Tools

Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng

A New Feedback-Based Method for Parameter Adaptation in Image Processing Routines

Arif ul Maula Khan, Ralf Mikut, Markus Reischl

A Pipelined Non-Deterministic Finite Automaton-Based String Matching Scheme Using Merged State Transitions in an FPGA

HyunJin Kim, Kang-Il Choi

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

Gustavo Arango-Argoty, Gargi Singh, [ ... ], Liqing Zhang

Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study

Stefano Di Carlo, Elena Rossi, [ ... ], Federica Meloni

Preconditioning 2D Integer Data for Fast Convex Hull Computations

José Oswaldo Cadenas, Graham M. Megson, Cris L. Luengo Hendriks

Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA

Kumar Parijat Tripathi, Daniela Evangelista, Antonio Zuccaro, Mario Rosario Guarracino

Efficient In Silico Identification of a Common Insertion in the MAK Gene which Causes Retinitis Pigmentosa

Kinga M. Bujakowska, Joseph White, [ ... ], Jason Comander

Computational Design of Hypothetical New Peptides Based on a Cyclotide Scaffold as HIV gp120 Inhibitor

Apiwat Sangphukieo, Wanapinun Nawae, [ ... ], Marasri Ruengjitchatchawalya

A Novel Byte-Substitution Architecture for the AES Cryptosystem

Fakir Sharif Hossain, Md. Liakot Ali

NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

Mohan A. V. S. K. Katta, Aamir W. Khan, [ ... ], Rajeev K. Varshney

JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing

David K. Brown, David L. Penkler, Thommas M. Musyoka, Özlem Tastan Bishop

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