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Computational pipelines

Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA

Kumar Parijat Tripathi, Daniela Evangelista, Antonio Zuccaro, Mario Rosario Guarracino

Efficient In Silico Identification of a Common Insertion in the MAK Gene which Causes Retinitis Pigmentosa

Kinga M. Bujakowska, Joseph White, [ ... ], Jason Comander

Computational Design of Hypothetical New Peptides Based on a Cyclotide Scaffold as HIV gp120 Inhibitor

Apiwat Sangphukieo, Wanapinun Nawae, [ ... ], Marasri Ruengjitchatchawalya

A Novel Byte-Substitution Architecture for the AES Cryptosystem

Fakir Sharif Hossain, Md. Liakot Ali

NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

Mohan A. V. S. K. Katta, Aamir W. Khan, [ ... ], Rajeev K. Varshney

JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing

David K. Brown, David L. Penkler, Thommas M. Musyoka, Özlem Tastan Bishop

ExScalibur: A High-Performance Cloud-Enabled Suite for Whole Exome Germline and Somatic Mutation Identification

Riyue Bao, Kyle Hernandez, [ ... ], Jorge Andrade

Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects

Shantanu Singh, Xiaoyun Wu, [ ... ], Anne E. Carpenter

A Benchmark Data Set to Evaluate the Illumination Robustness of Image Processing Algorithms for Object Segmentation and Classification

Arif ul Maula Khan, Ralf Mikut, Markus Reischl

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling

Charlotte Herzeel, Pascal Costanza, [ ... ], Joke Reumers

An Automated, Adaptive Framework for Optimizing Preprocessing Pipelines in Task-Based Functional MRI

Nathan W. Churchill, Robyn Spring, [ ... ], Stephen C. Strother

Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes

Suyash S. Shringarpure, Andrew Carroll, Francisco M. De La Vega, Carlos D. Bustamante

Comparison of the Association of Sac Growth and Coil Compaction with Recurrence in Coil Embolized Cerebral Aneurysms

Anna L. Hoppe, Madhavan L. Raghavan, David M. Hasan

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