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Computational pipelines

A detailed comparison of analysis processes for MCC-IMS data in disease classification—Automated methods can replace manual peak annotations

Salome Horsch, Dominik Kopczynski, [ ... ], Jörg Rahnenführer

RAPIDSNPs: A new computational pipeline for rapidly identifying key genetic variants reveals previously unidentified SNPs that are significantly associated with individual platelet responses

Bajuna Rashid Salehe, Chris Ian Jones, Giuseppe Di Fatta, Liam James McGuffin

Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce

Dries Decap, Joke Reumers, [ ... ], Jan Fostier

Solving global shallow water equations on heterogeneous supercomputers

Haohuan Fu, Lin Gan, [ ... ], Guangwen Yang

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, [ ... ], Ségolène Caboche

A Scalable Data Access Layer to Manage Structured Heterogeneous Biomedical Data

Giovanni Delussu, Luca Lianas, Francesca Frexia, Gianluigi Zanetti

Sam2bam: High-Performance Framework for NGS Data Preprocessing Tools

Takeshi Ogasawara, Yinhe Cheng, Tzy-Hwa Kathy Tzeng

A New Feedback-Based Method for Parameter Adaptation in Image Processing Routines

Arif ul Maula Khan, Ralf Mikut, Markus Reischl

A Pipelined Non-Deterministic Finite Automaton-Based String Matching Scheme Using Merged State Transitions in an FPGA

HyunJin Kim, Kang-Il Choi

MetaStorm: A Public Resource for Customizable Metagenomics Annotation

Gustavo Arango-Argoty, Gargi Singh, [ ... ], Liqing Zhang

Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study

Stefano Di Carlo, Elena Rossi, [ ... ], Federica Meloni

Preconditioning 2D Integer Data for Fast Convex Hull Computations

José Oswaldo Cadenas, Graham M. Megson, Cris L. Luengo Hendriks

Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA

Kumar Parijat Tripathi, Daniela Evangelista, Antonio Zuccaro, Mario Rosario Guarracino

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