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Computational pipelines

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz, Terry M. Casstevens, [ ... ], Edward S. Buckler

Cardiovascular disease risk prediction using automated machine learning: A prospective study of 423,604 UK Biobank participants

Ahmed M. Alaa, Thomas Bolton, [ ... ], Mihaela van der Schaar

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, [ ... ], Peer Bork

From invisibility to readability: Recovering the ink of Herculaneum

Clifford Seth Parker, Stephen Parsons, [ ... ], William Brent Seales

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

Léa Siegwald, Hélène Touzet, [ ... ], Ségolène Caboche

Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment

Jason Li, Maria A. Doyle, [ ... ], Richard W. Tothill

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, [ ... ], Joel T. Dudley

Reading Akkadian cuneiform using natural language processing

Shai Gordin, Gai Gutherz, [ ... ], Yoram Cohen

Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing

Samuel V. Angiuoli, James R. White, [ ... ], W. Florian Fricke

SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner

Ruibang Luo, Thomas Wong, [ ... ], Tak-Wah Lam

Automated measurement of fetal head circumference using 2D ultrasound images

Thomas L. A. van den Heuvel, Dagmar de Bruijn, Chris L. de Korte, Bram van Ginneken

RNA-Seq Gene Profiling - A Systematic Empirical Comparison

Nuno A. Fonseca, John Marioni, Alvis Brazma

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