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Chromatin modification

Bisulphite sequencing in the presence of cytosine-conversion errors

Thomas James Ellis, Viktoria Nizhynska, Rahul Pisupati, Almudena Mollá-Morales, Magnus Nordborg

published 21 May 2025

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The application of cell-free DNA methylation patterns in critical illnesses: A protocol paper

Shih-Han Kao, K. Greer Stumpf, Hunter A. Gaudio, John C. Greenwood, Samuel S. Shin, Frances S. Shofer, David H. Jang

published 12 May 2025

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Epigenetic background of lineage-specific gene expression landscapes of four Staphylococcus aureus hospital isolates

Ilya S. Korotetskiy, Sergey V. Shilov, Tatyana V. Kuznetsova, Natalya Zubenko, Lyudmila Ivanova, Oleg N. Reva

published 05 May 2025

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DNMT3A facilitates breast cancer progression via regulating ADAMTS8 mediated EGFR-MEK-ERK activation

Shan Yang, Meng Cheng, Shaonan Zhang, Haoqi Wang, Jiaxing Wang, Xi Zhang, Yunzhe Mi, Sainan Li

published 05 May 2025

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Identification and functional analysis of five hub lncRNAs associated with oncogenesis of Hepatocellular Carcinoma

Zhaomin Deng, Lu Pu, Yongxin Ma, Hao Jiang

published 30 Apr 2025

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Gene expression profiling, prognosis, and immune microenvironment of KLF4 in malignancies

Shoukai Yu, Lingmei Qian, Tianlang Tong, Xujun Ma

published 29 Apr 2025

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Noninvasive prognostication of hepatocellular carcinoma based on cell-free DNA methylation

Ran Hu, Benjamin Tran, Shuo Li, Mary L. Stackpole, Weihua Zeng, Yonggang Zhou, Andrew Melehy, Saeed Sadeghi, Richard S. Finn, Xianghong Jasmine Zhou, Wenyuan Li, Vatche G. Agopian

published 25 Apr 2025

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Methylome and transcriptome analyses reveal HLA-DMB’s contribution to periodontitis development

Bo Zhao, Ronghua Li

published 23 Apr 2025

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Tissue of origin characterization of cell free DNA in seminal plasma: Implications for new liquid biopsies

Stephanie Huang, James C. Hart, James F. Smith, Shellie Bench, Laura Rivas Yepes, Bailey Griscom, Kim M. Clark-Langone

published 31 Mar 2025

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Epigenome-wide methylation analysis shows phosphonoethylamine alleviates aberrant DNA methylation in NASH caused by Pcyt2 deficiency

Sophie Grapentine, Prasoon Agarwal, Vernon W. Dolinsky, Marica Bakovic

published 28 Mar 2025

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Stem cell culture conditions affect in vitro differentiation potential and mouse gastruloid formation

Marloes Blotenburg, Lianne Suurenbroek, Danique Bax, Joëlle de Visser, Vivek Bhardwaj, Luca Braccioli, Elzo de Wit, Antonius van Boxtel, Hendrik Marks, Peter Zeller

published 26 Mar 2025

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Deciphering the structural consequences of R83 and R152 methylation on DNA polymerase β using molecular modeling

Amit Srivastava, Haitham Idriss, Gobind Das, Sufian Abedrabbo, Mohd Sahir Shamsir, Dirar Homouz

published 12 Mar 2025

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Altered spawning seasons of Atlantic salmon broodstock transcriptionally and epigenetically influence cell cycle and lipid-mediated regulations in their offspring

Takaya Saito, Marit Espe, Maren Mommens, Christoph Bock, Jorge M.O. Fernandes, Kaja Helvik Skjærven

published 24 Feb 2025

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