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Chromatin modification

Epigenome and three-dimensional genome architecture remodeling during NDM29-mediated retro-transformation of neuroblastoma cells

Francesca Baldini, Aldo Pagano, Lama Zeaiter, Paolo Bianchini, Hawraa Zbeeb, Alberto Diaspro, Laura Vergani

published 31 Jul 2025

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Loss-of-function mutation of NSD2 is associated with abnormal placentation accompanied by fetal growth retardation in mice

Eriko Ohnishi, Shiori Kinoshita, Kazuhiko Nakabayashi, Kenichiro Hata, Tomoko Kawai

published 21 Jul 2025

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Prenatal stress increases corticosterone levels in offspring by impairing placental glucocorticoid barrier function

Can Liu, Hongya Liu, Hongyu Li, Deguang Yang, Ye Li, Rui Wang, Jiashu Zhu, Shuqin Ma, Suzhen Guan

published 18 Jul 2025

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Whole genome DNA methylation patterns in tissue and cfDNA associated with fibrosis reflect the complex signature of MASLD

Jongseong Ahn, Soyeon Kim, Jae Yoon Jeong, Sunghoon Heo, Kyung-hee Pyo, Eun-Ae Shin, Wonsik Kim, Jae-Ho Lee, Na Ryung Choi, Han Ah Lee, Hwang-Phill Kim, Sang-Hyun Song, Hwi Young Kim, Tae-You Kim, Jung Weon Lee

published 17 Jul 2025

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Measuring technical variability in illumina DNA methylation microarrays

Anderson A. Butler, Jason J. Kras, Karolina P. Chwalek, Enrique I. Ramos, Isaac J. Bishof, David S. Vogel, Daniel L. Vera

published 11 Jul 2025

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Rationale and study protocol of the MAMELI Cohort study (Mapping the Methylation of repetitive elements to track the Exposome effects on health: the city of Legnano as a Living lab)

Valentina Bollati, Federica Rota, Laura Dioni, Chiara Favero, Simona Iodice, Marta Gallazzi, Andrea Spinazzè, Giacomo Fanti, Davide Campagnolo, Tiago Nardi, Davide Biganzoli, Eva Dariol, Rachele Matsagani, Mirjam Hoxha, Paola Monti, Benedetta Albetti, Letizia Tarantini, Davide Barbuto, Ester Luconi, Giuseppe Marano, Giacomo Biganzoli, Roberta Biciuffi, Patrizia Boracchi, Domenico M. Cavallo, Pilar M. Guerrieri, Fabio Mosca, Stefano Gustincich, Giovanni Sanesi, Luca Ferrari, Michele Carugno, Silvia Fustinoni, Angela Cecilia Pesatori, Luca Pandolfini, Michele Miragoli, Andrea Cattaneo, Elia Biganzoli

published 09 Jul 2025

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3Mont: A multi-omics integrative tool for breast cancer subtype stratification

Miray Unlu Yazici, J. S. Marron, Burcu Bakir-Gungor, Fei Zou, Malik Yousef

published 27 Jun 2025

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Aging dimensions and markers as relative predictors of mortality in a longitudinal epidemiological sample

Kristian E. Markon, Frank D. Mann, Colin D. Freilich, Steve Cole, Robert F. Krueger

published 18 Jun 2025

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SERS-based detection of DNA methylation for cancer diagnosis: Cation-mediated adsorption to silver nanoparticles

Stefania D. Iancu, Vlad Moisoiu, Bogdan Adrian Tigu, Andrei Stefancu, Oana M. Biro, Ciprian Tomuleasa, Nicolae Leopold

published 13 Jun 2025

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Identification and characterization of eccDNA-driven genes in humans

Yuxi Gu, Yidan Song, Jun Liu

published 06 Jun 2025

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Epigenetic responses in Borrelia-infected Ixodes scapularis ticks: Over-expression of euchromatic histone lysine methyltransferase 2 and no change in DNA methylation

Grace Hadley MacIntosh, Alexandra C. Nuyens, Jessica L. Vickery, Anne Berthold, Vett K. Lloyd

published 05 Jun 2025

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Genome-wide DNA methylation analysis of hippocampal tissue in a murine model of attention deficit-hyperactivity disorder

Rodrigo Vidal, Ignacio Lopez, Gonzalo Ugarte, Darwin Contreras, Ricardo Piña, Felipe Godoy, Carlos Rozas, David Rubio, Carola Mantellero, Luis Constandil, Jorge Escobar, Bernardo Morales

published 04 Jun 2025

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AD-GCN: A novel graph convolutional network integrating multi-omics data for enhanced Alzheimer’s disease diagnosis

Zilu Li, Qingyun Li, Xiaoqing Li, Wei Luo, Haiyan Guo, Chunyan Zhao, Canzhen Yang, Anke Xie, Kai Hu, Yangfan Guo

published 02 Jun 2025

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