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BLAST algorithm

GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

De Novo Assembly, Gene Annotation and Marker Development Using Illumina Paired-End Transcriptome Sequences in Celery (Apium graveolens L.)

Nan Fu, Qian Wang, Huo-Lin Shen

How Effective Are DNA Barcodes in the Identification of African Rainforest Trees?

Ingrid Parmentier, Jérôme Duminil, [ ... ], Olivier J. Hardy

SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

Richard J. Edwards, Norman E. Davey, Denis C. Shields

Transcriptome Analysis and SSR/SNP Markers Information of the Blunt Snout Bream (Megalobrama amblycephala)

Zexia Gao, Wei Luo, [ ... ], Weimin Wang

Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade

Leonidas Salichos, Antonis Rokas

Construction of Customized Sub-Databases from NCBI-nr Database for Rapid Annotation of Huge Metagenomic Datasets Using a Combined BLAST and MEGAN Approach

Ke Yu, Tong Zhang

Chromatin Immunoprecipitation to Analyze DNA Binding Sites of HMGA2

Nina Winter, Rolf Nimzyk, [ ... ], Jörn Bullerdiek

Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing

Marc Duez, Mathieu Giraud, [ ... ], Florian Thonier

Evaluation of Alignment Algorithms for Discovery and Identification of Pathogens Using RNA-Seq

Ivan Borozan, Stuart N. Watt, Vincent Ferretti

Diversity Measures in Environmental Sequences Are Highly Dependent on Alignment Quality—Data from ITS and New LSU Primers Targeting Basidiomycetes

Dirk Krüger, Danuta Kapturska, [ ... ], Tesfaye Wubet

The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding

Indra Neil Sarkar, Michael Trizna

Floral Transcriptome Sequencing for SSR Marker Development and Linkage Map Construction in the Tea Plant (Camellia sinensis)

Li-Qiang Tan, Li-Yuan Wang, [ ... ], Jin-Bo Liang

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