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BLAST algorithm

Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States

Yi Chen, Yan Luo, Phillip Curry, Ruth Timme, David Melka, Matthew Doyle, Mickey Parish, Thomas S. Hammack, Marc W. Allard, Eric W. Brown, Errol A. Strain

published 06 Feb 2017

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Development of a Feature and Template-Assisted Assembler and Application to the Analysis of a Foot-and-Mouth Disease Virus Genotyping Microarray

Roger W. Barrette, Jessica M. Rowland, Frederic R. Grau, Michael T. McIntosh

published 03 Jan 2017

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Deep, Staged Transcriptomic Resources for the Novel Coleopteran Models Atrachya menetriesi and Callosobruchus maculatus

Matthew A. Benton, Nathan J. Kenny, Kai H. Conrads, Siegfried Roth, Jeremy A. Lynch

published 01 Dec 2016

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PRIMO: An Interactive Homology Modeling Pipeline

Rowan Hatherley, David K. Brown, Michael Glenister, Özlem Tastan Bishop

published 17 Nov 2016

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Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing

Marc Duez, Mathieu Giraud, Ryan Herbert, Tatiana Rocher, Mikaël Salson, Florian Thonier

published 11 Nov 2016

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Taxonomic Identity Resolution of Highly Phylogenetically Related Strains and Selection of Phylogenetic Markers by Using Genome-Scale Methods: The Bacillus pumilus Group Case

Martín Espariz, Federico A. Zuljan, Luis Esteban, Christian Magni

published 22 Sep 2016

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BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts

Etienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François-Joseph Lapointe

published 31 Aug 2016

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A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions

Armen Abnousi, Shira L. Broschat, Ananth Kalyanaraman

published 23 Aug 2016

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SVM-Prot 2016: A Web-Server for Machine Learning Prediction of Protein Functional Families from Sequence Irrespective of Similarity

Ying Hong Li, Jing Yu Xu, Lin Tao, Xiao Feng Li, Shuang Li, Xian Zeng, Shang Ying Chen, Peng Zhang, Chu Qin, Cheng Zhang, Zhe Chen, Feng Zhu, Yu Zong Chen

published 15 Aug 2016

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GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

published 02 Aug 2016

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Phylogenomics and Divergence Dating of Fungus-Farming Ants (Hymenoptera: Formicidae) of the Genera Sericomyrmex and Apterostigma

Ana Ješovnik, Vanessa L. González, Ted R. Schultz

published 28 Jul 2016

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CATO: The Clone Alignment Tool

Peter V. Henstock, Peter LaPan

published 26 Jul 2016

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Probing the Rare Biosphere of the North-West Mediterranean Sea: An Experiment with High Sequencing Effort

Bibiana G. Crespo, Philip J. Wallhead, Ramiro Logares, Carlos Pedrós-Alió

published 21 Jul 2016

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