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BLAST algorithm

Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States

Yi Chen, Yan Luo, [ ... ], Errol A. Strain

Development of a Feature and Template-Assisted Assembler and Application to the Analysis of a Foot-and-Mouth Disease Virus Genotyping Microarray

Roger W. Barrette, Jessica M. Rowland, Frederic R. Grau, Michael T. McIntosh

Deep, Staged Transcriptomic Resources for the Novel Coleopteran Models Atrachya menetriesi and Callosobruchus maculatus

Matthew A. Benton, Nathan J. Kenny, [ ... ], Jeremy A. Lynch

PRIMO: An Interactive Homology Modeling Pipeline

Rowan Hatherley, David K. Brown, Michael Glenister, Özlem Tastan Bishop

Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing

Marc Duez, Mathieu Giraud, [ ... ], Florian Thonier

Taxonomic Identity Resolution of Highly Phylogenetically Related Strains and Selection of Phylogenetic Markers by Using Genome-Scale Methods: The Bacillus pumilus Group Case

Martín Espariz, Federico A. Zuljan, Luis Esteban, Christian Magni

BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts

Etienne Lord, Margaux Le Cam, [ ... ], François-Joseph Lapointe

A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions

Armen Abnousi, Shira L. Broschat, Ananth Kalyanaraman

SVM-Prot 2016: A Web-Server for Machine Learning Prediction of Protein Functional Families from Sequence Irrespective of Similarity

Ying Hong Li, Jing Yu Xu, [ ... ], Yu Zong Chen

GPU-Acceleration of Sequence Homology Searches with Database Subsequence Clustering

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

Phylogenomics and Divergence Dating of Fungus-Farming Ants (Hymenoptera: Formicidae) of the Genera Sericomyrmex and Apterostigma

Ana Ješovnik, Vanessa L. González, Ted R. Schultz

CATO: The Clone Alignment Tool

Peter V. Henstock, Peter LaPan

Probing the Rare Biosphere of the North-West Mediterranean Sea: An Experiment with High Sequencing Effort

Bibiana G. Crespo, Philip J. Wallhead, Ramiro Logares, Carlos Pedrós-Alió

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