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BLAST algorithm

Genome-Wide Comparative Gene Family Classification

Christian Frech, Nansheng Chen

Prediction of Membrane Transport Proteins and Their Substrate Specificities Using Primary Sequence Information

Nitish K. Mishra, Junil Chang, Patrick X. Zhao

Evaluating freshwater macroinvertebrates from eDNA metabarcoding: A river Nalón case study

Sara Fernández, Saúl Rodríguez, [ ... ], Eva García-Vázquez

A pipeline for metabarcoding and diet analysis from fecal samples developed for a small semi-aquatic mammal

Oliver Hawlitschek, Angel Fernández-González, Alfonso Balmori-de la Puente, Jose Castresana

Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

Martin Kemler, Jeff Garnas, [ ... ], Bernard Slippers

Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities

Dominique A. Cowart, Miguel Pinheiro, [ ... ], Sophie Arnaud-Haond

Full Genome Virus Detection in Fecal Samples Using Sensitive Nucleic Acid Preparation, Deep Sequencing, and a Novel Iterative Sequence Classification Algorithm

Matthew Cotten, Bas Oude Munnink, [ ... ], Lia van der Hoek

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

Guorong Xu, Michael J. Strong, [ ... ], Christopher M. Taylor

Culture-Independent Microbiological Analysis of Foley Urinary Catheter Biofilms

Daniel N. Frank, Shandra S. Wilson, Allison L. St. Amand, Norman R. Pace

Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data

Will Rowe, Kate S. Baker, [ ... ], Gareth Pearce

ExtremeDB: A Unified Web Repository of Extremophilic Archaea and Bacteria

Manash Chandra Majhi, Abhisek Kumar Behera, [ ... ], Anil Kumar

QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data

Qian Zhou, Xiaoquan Su, [ ... ], Kang Ning

Mining RNA–Seq Data for Infections and Contaminations

Thomas Bonfert, Gergely Csaba, Ralf Zimmer, Caroline C. Friedel

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