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BLAST algorithm

iBLAST: Incremental BLAST of new sequences via automated e-value correction

Sajal Dash, Sarthok Rasique Rahman, Heather M. Hines, Wu-chun Feng

published 22 Apr 2021

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eDNA as a tool for non-invasive monitoring of the fauna of a turbid, well-mixed system, the Elbe estuary in Germany

Martin Schwentner, Reza Zahiri, Satoshi Yamamoto, Martin Husemann, Björn Kullmann, Ralf Thiel

published 16 Apr 2021

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AlnC: An extensive database of long non-coding RNAs in angiosperms

Ajeet Singh, A. T. Vivek, Shailesh Kumar

published 14 Apr 2021

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Robustification of RosettaAntibody and Rosetta SnugDock

Jeliazko R. Jeliazkov, Rahel Frick, Jing Zhou, Jeffrey J. Gray

published 25 Mar 2021

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PhotoModPlus: A web server for photosynthetic protein prediction from genome neighborhood features

Apiwat Sangphukieo, Teeraphan Laomettachit, Marasri Ruengjitchatchawalya

published 17 Mar 2021

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PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks

Seyyede Fatemeh Seyyedsalehi, Mahdieh Soleymani, Hamid R. Rabiee, Mohammad R. K. Mofrad

published 25 Feb 2021

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Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture

Saeedeh Akbari Rokn Abadi, Negin Hashemi Dijujin, Somayyeh Koohi

published 15 Jan 2021

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Host-parasitoid associations in marine planktonic time series: Can metabarcoding help reveal them?

Laura Käse, Katja Metfies, Stefan Neuhaus, Maarten Boersma, Karen Helen Wiltshire, Alexandra Claudia Kraberg

published 07 Jan 2021

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A thorough analysis of the contribution of experimental, derived and sequence-based predicted protein-protein interactions for functional annotation of proteins

Stavros Makrodimitris, Marcel Reinders, Roeland van Ham

published 25 Nov 2020

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The ITS region provides a reliable DNA barcode for identifying reishi/lingzhi (Ganoderma) from herbal supplements

Tess Gunnels, Matthew Creswell, Janis McFerrin, Justen B. Whittall

published 12 Nov 2020

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Survey of metaproteomics software tools for functional microbiome analysis

Ray Sajulga, Caleb Easterly, Michael Riffle, Bart Mesuere, Thilo Muth, Subina Mehta, Praveen Kumar, James Johnson, Bjoern Andreas Gruening, Henning Schiebenhoefer, Carolin A. Kolmeder, Stephan Fuchs, Brook L. Nunn, Joel Rudney, Timothy J. Griffin, Pratik D. Jagtap

published 10 Nov 2020

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Sensor orientation and other factors which increase the blast overpressure reporting errors

Anthony Misistia, Maciej Skotak, Arturo Cardenas, Eren Alay, Namas Chandra, Gary H. Kamimori

published 08 Oct 2020

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Short k-mer abundance profiles yield robust machine learning features and accurate classifiers for RNA viruses

Md. Nafis Ul Alam, Umar Faruq Chowdhury

published 18 Sep 2020

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