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BLAST algorithm

FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

published 31 Oct 2008

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High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs

Jonathan Livny, Hidayat Teonadi, Miron Livny, Matthew K. Waldor

published 12 Sep 2008

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Preservation of Genes Involved in Sterol Metabolism in Cholesterol Auxotrophs: Facts and Hypotheses

Giovanna Vinci, Xuhua Xia, Reiner A. Veitia

published 06 Aug 2008

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Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

Anders F. Andersson, Mathilda Lindberg, Hedvig Jakobsson, Fredrik Bäckhed, Pål Nyrén, Lars Engstrand

published 30 Jul 2008

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Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

Tim Urich, Anders Lanzén, Ji Qi, Daniel H. Huson, Christa Schleper, Stephan C. Schuster

published 25 Jun 2008

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iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources

Ivo D. Dinov, Daniel Rubin, William Lorensen, Jonathan Dugan, Jeff Ma, Shawn Murphy, Beth Kirschner, William Bug, Michael Sherman, Aris Floratos, David Kennedy, H. V. Jagadish, Jeanette Schmidt, Brian Athey, Andrea Califano, Mark Musen, Russ Altman, Ron Kikinis, Isaac Kohane, Scott Delp, D. Stott Parker, Arthur W. Toga

published 28 May 2008

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DNA Barcoding in the Cycadales: Testing the Potential of Proposed Barcoding Markers for Species Identification of Cycads

Chodon Sass, Damon P. Little, Dennis Wm. Stevenson, Chelsea D. Specht

published 07 Nov 2007

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SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

Richard J. Edwards, Norman E. Davey, Denis C. Shields

published 03 Oct 2007

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Analysis of Expressed Sequence Tags of the Cyclically Parthenogenetic Rotifer Brachionus plicatilis

Koushirou Suga, David Mark Welch, Yukari Tanaka, Yoshitaka Sakakura, Atsushi Hagiwara

published 01 Aug 2007

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Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes

Feng Chen, Aaron J. Mackey, Jeroen K. Vermunt, David S. Roos

published 18 Apr 2007

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Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective

R. Henrik Nilsson, Martin Ryberg, Erik Kristiansson, Kessy Abarenkov, Karl-Henrik Larsson, Urmas Kõljalg

published 20 Dec 2006

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